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{"arbt_e": -1.0}, "id": "EX_arbt_e", "gene_reaction_rule": ""}, {"name": "Aerobactin minus Fe3 exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_arbtn_LPAREN_e_RPAREN_"]}, "metabolites": {"arbtn_e": -1.0}, "id": "EX_arbtn_e", "gene_reaction_rule": ""}, {"name": "Aerobactin exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_arbtn_DASH_fe3_LPAREN_e_RPAREN_"]}, "metabolites": {"arbtn_fe3_e": -1.0}, "id": "EX_arbtn_fe3_e", "gene_reaction_rule": ""}, {"name": "L-Arginine exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_arg_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"arg__L_e": -1.0}, "id": "EX_arg__L_e", "gene_reaction_rule": ""}, {"name": "L-Ascorbate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_ascb_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"ascb__L_e": -1.0}, "id": "EX_ascb__L_e", "gene_reaction_rule": ""}, {"name": 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"Fe(III)hydroxamate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fe3hox_LPAREN_e_RPAREN_"]}, "metabolites": {"fe3hox_e": -1.0}, "id": "EX_fe3hox_e", "gene_reaction_rule": ""}, {"name": "Fe(III)hydoxamate, unloaded exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fe3hox_DASH_un_LPAREN_e_RPAREN_"]}, "metabolites": {"fe3hox_un_e": -1.0}, "id": "EX_fe3hox_un_e", "gene_reaction_rule": ""}, {"name": "Ferrichrome exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fecrm_LPAREN_e_RPAREN_"]}, "metabolites": {"fecrm_e": -1.0}, "id": "EX_fecrm_e", "gene_reaction_rule": ""}, {"name": "Ferrichrome minus Fe(III) exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fecrm_DASH_un_LPAREN_e_RPAREN_"]}, "metabolites": {"fecrm_un_e": -1.0}, "id": "EX_fecrm_un_e", "gene_reaction_rule": ""}, {"name": "Fe-enterobactin exchange", "upper_bound": 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["EX_lcts_LPAREN_e_RPAREN_"]}, "metabolites": {"lcts_e": -1.0}, "id": "EX_lcts_e", "gene_reaction_rule": ""}, {"name": "L-Leucine exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_leu_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"leu__L_e": -1.0}, "id": "EX_leu__L_e", "gene_reaction_rule": ""}, {"name": "KDO(2)-lipid (A) exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lipa_LPAREN_e_RPAREN_"]}, "metabolites": {"lipa_e": -1.0}, "id": "EX_lipa_e", "gene_reaction_rule": ""}, {"name": "Cold adapted KDO(2)-lipid (A) exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lipa_cold_LPAREN_e_RPAREN_"]}, "metabolites": {"lipa_cold_e": -1.0}, "id": "EX_lipa_cold_e", "gene_reaction_rule": ""}, {"name": "Lipoate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lipoate_LPAREN_e_RPAREN_"]}, "metabolites": {"lipoate_e": -1.0}, "id": "EX_lipoate_e", "gene_reaction_rule": ""}, {"name": "L-Lysine exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lys_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"lys__L_e": -1.0}, "id": "EX_lys__L_e", "gene_reaction_rule": ""}, {"name": "L-Lyxose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lyx_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"lyx__L_e": -1.0}, "id": "EX_lyx__L_e", "gene_reaction_rule": ""}, {"name": "D-Malate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_mal_DASH_D_LPAREN_e_RPAREN_"]}, "metabolites": {"mal__D_e": -1.0}, "id": "EX_mal__D_e", "gene_reaction_rule": ""}, {"name": "L-Malate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_mal_DASH_L_LPAREN_e_RPAREN_"]}, "metabolites": {"mal__L_e": -1.0}, "id": "EX_mal__L_e", "gene_reaction_rule": ""}, {"name": "Maltose exchange", "upper_bound": 1000.0, 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{"maltttr_e": -1.0}, "id": "EX_maltttr_e", "gene_reaction_rule": ""}, {"name": "D-Mannose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_man_LPAREN_e_RPAREN_"]}, "metabolites": {"man_e": -1.0}, "id": "EX_man_e", "gene_reaction_rule": ""}, {"name": "D-Mannose 6-phosphate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_man6p_LPAREN_e_RPAREN_"]}, "metabolites": {"man6p_e": -1.0}, "id": "EX_man6p_e", "gene_reaction_rule": ""}, {"name": "2(alpha-D-Mannosyl)-D-glycerate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_manglyc_LPAREN_e_RPAREN_"]}, "metabolites": {"manglyc_e": -1.0}, "id": "EX_manglyc_e", "gene_reaction_rule": ""}, {"name": "Melibiose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_melib_LPAREN_e_RPAREN_"]}, "metabolites": {"melib_e": -1.0}, "id": "EX_melib_e", "gene_reaction_rule": ""}, {"name": "Methanol 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"upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["23CUMPtex"]}, "metabolites": {"23cump_p": 1.0, "23cump_e": -1.0}, "id": "23CUMPtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "2,3-diaminopropionate transport in via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23DAPPAt2pp"]}, "metabolites": {"23dappa_c": 1.0, "h_c": 1.0, "h_p": -1.0, "23dappa_p": -1.0}, "id": "23DAPPAt2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "2,3-diaminopropionate transport via diffusion", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["23DAPPAtex"]}, "metabolites": {"23dappa_e": -1.0, "23dappa_p": 1.0}, "id": "23DAPPAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (UMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE2pp"]}, "metabolites": {"h2o_p": -1.0, "23cump_p": -1.0, "3ump_p": 1.0, "h_p": 1.0}, "id": "23PDE2pp", "gene_reaction_rule": "SF4273"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (CMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE4pp"]}, "metabolites": {"h2o_p": -1.0, "3cmp_p": 1.0, "23ccmp_p": -1.0, "h_p": 1.0}, "id": "23PDE4pp", "gene_reaction_rule": "SF4273"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (AMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE7pp"]}, "metabolites": {"3amp_p": 1.0, "h2o_p": -1.0, "h_p": 1.0, "23camp_p": -1.0}, "id": "23PDE7pp", "gene_reaction_rule": "SF4273"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "2',3'-cyclic-nucleotide phosphodiesterase (GMP) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["23PDE9pp"]}, "metabolites": {"23cgmp_p": -1.0, "3gmp_p": 1.0, "h_p": 1.0, "h2o_p": -1.0}, "id": "23PDE9pp", "gene_reaction_rule": "SF4273"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Meso-2,6-Diaminoheptanedioate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["26DAHtex"]}, "metabolites": {"26dap__M_e": -1.0, "26dap__M_p": 1.0}, "id": "26DAHtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C12:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA120tipp"]}, "metabolites": {"2ddecg3p_c": 1.0, "2ddecg3p_p": -1.0}, "id": "2AGPA120tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C14:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA140tipp"]}, "metabolites": {"2tdecg3p_c": 1.0, "2tdecg3p_p": -1.0}, "id": "2AGPA140tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C14:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA141tipp"]}, "metabolites": {"2tdec7eg3p_p": -1.0, "2tdec7eg3p_c": 1.0}, "id": "2AGPA141tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C16:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA160tipp"]}, "metabolites": {"2hdecg3p_c": 1.0, "2hdecg3p_p": -1.0}, "id": "2AGPA160tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C16:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA161tipp"]}, "metabolites": {"2hdec9eg3p_c": 1.0, "2hdec9eg3p_p": -1.0}, "id": "2AGPA161tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C18:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA180tipp"]}, "metabolites": {"2odecg3p_p": -1.0, "2odecg3p_c": 1.0}, "id": "2AGPA180tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphatidate (n-C18:1) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPA181tipp"]}, "metabolites": 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(n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPEAT181"]}, "metabolites": {"ocdcea_c": -1.0, "atp_c": -1.0, "2agpe181_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "pe181_c": 1.0}, "id": "2AGPEAT181", "gene_reaction_rule": "SF2846"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPG120tipp"]}, "metabolites": {"2agpg120_c": 1.0, "2agpg120_p": -1.0}, "id": "2AGPG120tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": "Transport, Inner Membrane", "name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0) transporter via facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2AGPG140tipp"]}, "metabolites": {"2agpg140_p": -1.0, "2agpg140_c": 1.0}, "id": "2AGPG140tipp", "gene_reaction_rule": "SF2845"}, {"subsystem": 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"lower_bound": 0.0, "notes": {"original_bigg_ids": ["4PCP"]}, "metabolites": {"h2o_c": -1.0, "ala__D_c": 1.0, "LalaDgluMdapDala_c": -1.0, "LalaDgluMdap_c": 1.0}, "id": "4PCP", "gene_reaction_rule": "SF1182"}, {"subsystem": "Murein Recycling", "name": "Tetrapeptide L,D-carboxypeptidase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4PCPpp"]}, "metabolites": {"LalaDgluMdapDala_p": -1.0, "ala__D_p": 1.0, "LalaDgluMdap_p": 1.0, "h2o_p": -1.0}, "id": "4PCPpp", "gene_reaction_rule": ""}, {"subsystem": "Murein Recycling", "name": "Tetrapeptide (LalaDgluMdapDala) transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4PEPTabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "LalaDgluMdapDala_c": 1.0, "LalaDgluMdapDala_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "4PEPTabcpp", "gene_reaction_rule": "SF1244 and SF1245 and SF1246 and SF1247 and SF1248"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "LalaDgluMdapDala (pentapeptide) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["4PEPTtex"]}, "metabolites": {"LalaDgluMdapDala_p": 1.0, "LalaDgluMdapDala_e": -1.0}, "id": "4PEPTtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "5-Dehydro-D-gluconate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["5DGLCNtex"]}, "metabolites": {"5dglcn_p": 1.0, "5dglcn_e": -1.0}, "id": "5DGLCNtex", "gene_reaction_rule": "SF0289 or SF0926 or SF2299 or SF1823"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "5'-deoxyadenosine nuclosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["5DOAN"]}, "metabolites": {"dad_5_c": -1.0, "ade_c": 1.0, "h2o_c": -1.0, "5drib_c": 1.0}, "id": "5DOAN", "gene_reaction_rule": "SF0151"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "5-Methylthio-D-ribose transport via proton diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["5MTRtex"]}, "metabolites": {"5mtr_e": -1.0, "5mtr_p": 1.0}, "id": "5MTRtex", "gene_reaction_rule": "SF1823 or SF0926 or SF2299 or SF0289"}, {"subsystem": "Transport, Inner Membrane", "name": "5-Methylthio-D-ribose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["5MTRtpp"]}, "metabolites": {"5mtr_c": -1.0, "h_c": -1.0, "h_p": 1.0, "5mtr_p": 1.0}, "id": "5MTRtpp", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Arabinose-5-phosphate isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["A5PISO"]}, "metabolites": {"ara5p_c": 1.0, "ru5p__D_c": -1.0}, "id": "A5PISO", "gene_reaction_rule": "SF3237 or SF2731"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS1"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "amp_c": 1.0, "myrsACP_c": 1.0, "ttdca_c": -1.0}, "id": "AACPS1", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS2"]}, "metabolites": {"atp_c": -1.0, "tdeACP_c": 1.0, "ppi_c": 1.0, "ACP_c": -1.0, "amp_c": 1.0, "ttdcea_c": -1.0}, "id": "AACPS2", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS3"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "amp_c": 1.0, "palmACP_c": 1.0, "hdca_c": -1.0}, "id": "AACPS3", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS4"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "hdcea_c": -1.0, "amp_c": 1.0, "hdeACP_c": 1.0}, "id": "AACPS4", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS5"]}, "metabolites": {"ocdcea_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "amp_c": 1.0, "octeACP_c": 1.0}, "id": "AACPS5", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS6"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "amp_c": 1.0, "ocdca_c": -1.0, "ocdcaACP_c": 1.0}, "id": "AACPS6", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS7"]}, "metabolites": {"atp_c": -1.0, "ddca_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "amp_c": 1.0, "ddcaACP_c": 1.0}, "id": "AACPS7", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C10:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS8"]}, "metabolites": {"dcaACP_c": 1.0, "atp_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "amp_c": 1.0, "dca_c": -1.0}, "id": "AACPS8", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Acyl-[acyl-carrier-protein] synthetase  (n-C8:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACPS9"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "ACP_c": -1.0, "octa_c": -1.0, "ocACP_c": 1.0, "amp_c": 1.0}, "id": "AACPS9", "gene_reaction_rule": "SF2846 and SF1098"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Aminoacetone:oxygen oxidoreductase(deaminating)(flavin-containing)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AACTOOR"]}, "metabolites": {"o2_c": -1.0, "h2o_c": -1.0, "aact_c": -1.0, "h2o2_c": 1.0, "mthgxl_c": 1.0, "nh4_c": 1.0}, "id": "AACTOOR", "gene_reaction_rule": ""}, {"subsystem": "Cell Envelope Biosynthesis", "name": "DTDP-N-4-acetamido-4,6-dideoxy-D-galactose transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AADDGT"]}, "metabolites": {"unagamu_c": -1.0, "unagamuf_c": 1.0, "dtdp4aaddg_c": -1.0, "dtdp_c": 1.0, "h_c": 1.0}, "id": "AADDGT", "gene_reaction_rule": "SF3867"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Alpha-amylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AAMYL"]}, "metabolites": {"14glucan_c": -1.0, "malthx_c": 1.0}, "id": "AAMYL", "gene_reaction_rule": "SF1970"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Alpha-amylase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AAMYLpp"]}, "metabolites": {"14glucan_p": -1.0, "malthx_p": 1.0}, "id": "AAMYLpp", "gene_reaction_rule": "SF3615"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Arbutin 6-phosphate glucohydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AB6PGH"]}, "metabolites": {"g6p_c": 1.0, "h2o_c": -1.0, "hqn_c": 1.0, "arbt6p_c": -1.0}, "id": "AB6PGH", "gene_reaction_rule": "SF2887"}, {"subsystem": "Arginine and Proline Metabolism", "name": "4-aminobutyrate transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ABTA"]}, "metabolites": {"akg_c": -1.0, "glu__L_c": 1.0, "sucsal_c": 1.0, "4abut_c": -1.0}, "id": "ABTA", "gene_reaction_rule": "SF2689 or SF1307"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Aminobutyraldehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ABUTD"]}, "metabolites": {"h2o_c": -1.0, "4abutn_c": -1.0, "4abut_c": 1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "ABUTD", "gene_reaction_rule": "SF1774"}, {"subsystem": "Transport, Inner Membrane", "name": "4-aminobutyrate transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ABUTt2pp"]}, "metabolites": {"4abut_p": -1.0, "h_c": 1.0, "h_p": -1.0, "4abut_c": 1.0}, "id": "ABUTt2pp", "gene_reaction_rule": "SF2690"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "4-aminobutyrate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ABUTtex"]}, "metabolites": {"4abut_e": -1.0, "4abut_p": 1.0}, "id": "ABUTtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA C-acetyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT1r"]}, "metabolites": {"aacoa_c": 1.0, "coa_c": 1.0, "accoa_c": -2.0}, "id": "ACACT1r", "gene_reaction_rule": "SF2420 or SF3921"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA C-acyltransferase (butanoyl-CoA) (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACT2r"]}, "metabolites": {"btcoa_c": -1.0, "coa_c": 1.0, "accoa_c": -1.0, "3ohcoa_c": 1.0}, "id": "ACACT2r", "gene_reaction_rule": "SF2420 or SF3921"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA C-acyltransferase (hexanoyl-CoA) (r)", "upper_bound": 1000.0, "lower_bound": -1000.0, 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(extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACtex"]}, "metabolites": {"acac_p": 1.0, "acac_e": -1.0}, "id": "ACACtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Pyruvate Metabolism", "name": "Acetaldehyde dehydrogenase (acetylating)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACALD"]}, "metabolites": {"nad_c": -1.0, "acald_c": -1.0, "coa_c": -1.0, "h_c": 1.0, "accoa_c": 1.0, "nadh_c": 1.0}, "id": "ACALD", "gene_reaction_rule": "SF1240"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Acetaldehyde transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACALDtex"]}, "metabolites": {"acald_p": 1.0, "acald_e": -1.0}, "id": "ACALDtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Acetaldehyde 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"N-acetyl-D-galactosamine 1-phosphatase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAL1PPpp"]}, "metabolites": {"pi_p": 1.0, "h2o_p": -1.0, "acgal_p": 1.0, "acgal1p_p": -1.0}, "id": "ACGAL1PPpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetyl-D-galactosamine 1-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACGAL1Ptex"]}, "metabolites": {"acgal1p_p": 1.0, "acgal1p_e": -1.0}, "id": "ACGAL1Ptex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACGALtex"]}, "metabolites": {"acgal_p": 1.0, "acgal_e": -1.0}, "id": "ACGALtex", "gene_reaction_rule": "SF0289 or SF0926 or 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"gene_reaction_rule": "SF1123"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAMT"]}, "metabolites": {"uacgam_c": -1.0, "ump_c": 1.0, "unaga_c": 1.0, "udcpp_c": -1.0}, "id": "ACGAMT", "gene_reaction_rule": "SF3858"}, {"subsystem": "Transport, Inner Membrane", "name": "N-Acetyl-D-glucosamine transport via PEP:Pyr PTS  (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAptspp"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "acgam_p": -1.0, "acgam6p_c": 1.0}, "id": "ACGAptspp", "gene_reaction_rule": "(SF2472 and SF1105 and SF2470 and SF2471) or (SF0614 and SF2470 and SF2471)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-Acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACGAtex"]}, "metabolites": {"acgam_p": 1.0, "acgam_e": -1.0}, "id": "ACGAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Acetylglutamate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGK"]}, "metabolites": {"acg5p_c": 1.0, "acglu_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "ACGK", "gene_reaction_rule": "SF4036"}, {"subsystem": "Arginine and Proline Metabolism", "name": "N-acetylglutamate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGS"]}, "metabolites": {"glu__L_c": -1.0, "acglu_c": 1.0, "coa_c": 1.0, "h_c": 1.0, "accoa_c": -1.0}, "id": "ACGS", "gene_reaction_rule": "SF2829"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "2-aceto-2-hydroxybutanoate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACHBS"]}, "metabolites": {"2ahbut_c": 1.0, "pyr_c": -1.0, "2obut_c": -1.0, "co2_c": 1.0, "h_c": -1.0}, "id": "ACHBS", "gene_reaction_rule": "(SF3791 and SF3790) or (SF0072 and SF0073)"}, {"subsystem": "Pyruvate Metabolism", "name": "Acetate kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACKr"]}, "metabolites": {"ac_c": -1.0, "actp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "ACKr", "gene_reaction_rule": "SF3155 or SF2372 or SF1859"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Acetolactate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACLS"]}, "metabolites": {"pyr_c": -2.0, "co2_c": 1.0, "h_c": -1.0, "alac__S_c": 1.0}, "id": "ACLS", "gene_reaction_rule": "(SF3791 and SF3790) or (SF0072 and SF0073)"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-acetylmuramate 6-phosphate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACM6PH"]}, "metabolites": {"acgam6p_c": 1.0, "h2o_c": -1.0, "lac__D_c": 1.0, "acmum6p_c": -1.0}, "id": "ACM6PH", "gene_reaction_rule": "SF2481"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetyl-D-mannosaminuronic acid transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMAMUT"]}, "metabolites": {"udp_c": 1.0, "unagamu_c": 1.0, "h_c": 1.0, "uacmamu_c": -1.0, "unaga_c": -1.0}, "id": "ACMAMUT", "gene_reaction_rule": "SF3869"}, {"subsystem": "Transport, Inner Membrane", "name": "N-acetyl-D-mannosamine transport via PTS  (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMANAptspp"]}, "metabolites": {"acmana_p": -1.0, "pep_c": -1.0, "pyr_c": 1.0, "acmanap_c": 1.0}, "id": "ACMANAptspp", "gene_reaction_rule": "SF1411 and SF1410 and SF1409 and SF2470 and SF2471"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetyl-D-mannosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACMANAtex"]}, "metabolites": {"acmana_p": 1.0, "acmana_e": -1.0}, "id": "ACMANAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "N-acetylmuramate transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMUMptspp"]}, "metabolites": {"pep_c": -1.0, "acmum6p_c": 1.0, "pyr_c": 1.0, "acmum_p": -1.0}, "id": "ACMUMptspp", "gene_reaction_rule": "SF2472 and SF2483 and SF2470 and SF2471"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "N-acetylmuramate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACMUMtex"]}, "metabolites": {"acmum_e": -1.0, "acmum_p": 1.0}, "id": "ACMUMtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "N-acetylneuraminate proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACNAMt2pp"]}, "metabolites": {"h_p": -1.0, "h_c": 1.0, "acnam_p": -1.0, "acnam_c": 1.0}, "id": "ACNAMt2pp", "gene_reaction_rule": "SF3260"}, {"subsystem": "Transport, Outer Membrane", "name": "N-acetylneuraminate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACNAMtex"]}, "metabolites": {"acnam_e": -1.0, "acnam_p": 1.0}, "id": "ACNAMtex", "gene_reaction_rule": "SF4211 or SF0926 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "N-Acetylneuraminate lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACNML"]}, "metabolites": {"pyr_c": 1.0, "acmana_c": 1.0, "acnam_c": -1.0}, "id": "ACNML", "gene_reaction_rule": "SF3261"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (butanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD1f"]}, "metabolites": {"btcoa_c": -1.0, "b2coa_c": 1.0, "fadh2_c": 1.0, "fad_c": -1.0}, "id": "ACOAD1f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (hexanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD2f"]}, "metabolites": {"fadh2_c": 1.0, "fad_c": -1.0, "hxcoa_c": -1.0, "hx2coa_c": 1.0}, "id": "ACOAD2f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (octanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD3f"]}, "metabolites": {"oc2coa_c": 1.0, "fadh2_c": 1.0, "occoa_c": -1.0, "fad_c": -1.0}, "id": "ACOAD3f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (decanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD4f"]}, "metabolites": {"fadh2_c": 1.0, "dc2coa_c": 1.0, "dcacoa_c": -1.0, "fad_c": -1.0}, "id": "ACOAD4f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (dodecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD5f"]}, "metabolites": {"ddcacoa_c": -1.0, "fadh2_c": 1.0, "fad_c": -1.0, "dd2coa_c": 1.0}, "id": "ACOAD5f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (tetradecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD6f"]}, "metabolites": {"fadh2_c": 1.0, "fad_c": -1.0, "tdcoa_c": -1.0, "td2coa_c": 1.0}, "id": "ACOAD6f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (hexadecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD7f"]}, "metabolites": {"pmtcoa_c": -1.0, "fadh2_c": 1.0, "fad_c": -1.0, "hdd2coa_c": 1.0}, "id": "ACOAD7f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acyl-CoA dehydrogenase (octadecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOAD8f"]}, "metabolites": {"stcoa_c": -1.0, "od2coa_c": 1.0, "fadh2_c": 1.0, "fad_c": -1.0}, "id": "ACOAD8f", "gene_reaction_rule": "SF0271"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Acetyl-CoA ACP transacylase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOATA"]}, "metabolites": {"acACP_c": 1.0, "ACP_c": -1.0, "coa_c": 1.0, "accoa_c": -1.0}, "id": "ACOATA", "gene_reaction_rule": "SF1098 and SF1095"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Acetylornithine deacetylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACODA"]}, "metabolites": {"h2o_c": -1.0, "orn_c": 1.0, "ac_c": 1.0, "acorn_c": -1.0}, "id": "ACODA", "gene_reaction_rule": "SF4034"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Arabinose modified core oligosaccharide lipid A transport via ABC system (periplasm to extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACOLIPAabctex"]}, "metabolites": {"h2o_c": -1.0, "acolipa_p": -1.0, "adp_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "acolipa_e": 1.0, "pi_c": 1.0}, "id": "ACOLIPAabctex", "gene_reaction_rule": "SF3240 and SF3241 and SF3239 and SF4228 and SF4227"}, {"subsystem": "Unassigned", "name": "Aconitate isomerase (spontaneous)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACONIs"]}, "metabolites": {"acon_T_c": -1.0, "acon_C_c": 1.0}, "id": "ACONIs", "gene_reaction_rule": "s0001"}, {"subsystem": "Unassigned", "name": "Trans-aconitate methyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACONMT"]}, "metabolites": {"amet_c": -1.0, "ahcys_c": 1.0, "acon_T_c": -1.0, "aconm_c": 1.0}, "id": "ACONMT", "gene_reaction_rule": "SF1576"}, {"subsystem": "Citric Acid Cycle", "name": "Aconitase (half-reaction A, Citrate hydro-lyase)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACONTa"]}, "metabolites": {"h2o_c": 1.0, "cit_c": -1.0, "acon_C_c": 1.0}, "id": "ACONTa", "gene_reaction_rule": "SF0115 or SF1280"}, {"subsystem": "Citric Acid Cycle", "name": "Aconitase (half-reaction B, Isocitrate hydro-lyase)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACONTb"]}, "metabolites": {"h2o_c": -1.0, "icit_c": 1.0, "acon_C_c": -1.0}, "id": "ACONTb", "gene_reaction_rule": "SF0115 or SF1280"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Acetylornithine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACOTA"]}, "metabolites": {"akg_c": -1.0, "glu__L_c": 1.0, "acg5sa_c": 1.0, "acorn_c": -1.0}, "id": "ACOTA", "gene_reaction_rule": "astC or SF3378"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACPPAT120"]}, "metabolites": {"ddcap_c": 1.0, "pi_c": -1.0, "ACP_c": 1.0, "h_c": -1.0, "ddcaACP_c": -1.0}, "id": "ACPPAT120", "gene_reaction_rule": "SF1098 and SF1094"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACPPAT140"]}, "metabolites": {"ttdcap_c": 1.0, "pi_c": -1.0, "h_c": -1.0, "myrsACP_c": -1.0, "ACP_c": 1.0}, "id": "ACPPAT140", "gene_reaction_rule": "SF1098 and SF1094"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACPPAT141"]}, 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-1.0, "adp_c": 1.0}, "id": "ADK3", "gene_reaction_rule": "SF0419"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Adentylate kinase (ITP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ADK4"]}, "metabolites": {"amp_c": -1.0, "itp_c": -1.0, "adp_c": 1.0, "idp_c": 1.0}, "id": "ADK4", "gene_reaction_rule": "SF0419"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Adenosylmethionine decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ADMDC"]}, "metabolites": {"amet_c": -1.0, "co2_c": 1.0, "h_c": -1.0, "ametam_c": 1.0}, "id": "ADMDC", "gene_reaction_rule": "SF0117"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Adenylate cyclase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ADNCYC"]}, "metabolites": {"ppi_c": 1.0, "camp_c": 1.0, "atp_c": -1.0}, "id": "ADNCYC", "gene_reaction_rule": "SF3878"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Adenosine 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-1000.0, "notes": {"original_bigg_ids": ["ADNtex"]}, "metabolites": {"adn_e": -1.0, "adn_p": 1.0}, "id": "ADNtex", "gene_reaction_rule": "SF0348"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Adenosyl cobinamide kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ADOCBIK"]}, "metabolites": {"adocbip_c": 1.0, "adocbi_c": -1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "ADOCBIK", "gene_reaction_rule": "SF2061"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Adenosylcobalamin 5'-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ADOCBLS"]}, "metabolites": {"adocbl_c": 1.0, "gmp_c": 1.0, "h_c": 1.0, "rdmbzi_c": -1.0, "agdpcbi_c": -1.0}, "id": "ADOCBLS", "gene_reaction_rule": "SF2060"}, {"subsystem": "Transport, Inner Membrane", "name": "Adenosylcobalamin transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGM4PCP"]}, "metabolites": {"ala__D_c": 1.0, "h2o_c": -1.0, "anhgm4p_c": -1.0, "anhgm3p_c": 1.0}, "id": "AGM4PCP", "gene_reaction_rule": "SF1182"}, {"subsystem": "Murein Recycling", "name": "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGM4PCPpp"]}, "metabolites": {"h2o_p": -1.0, "ala__D_p": 1.0, "anhgm3p_p": 1.0, "anhgm4p_p": -1.0}, "id": "AGM4PCPpp", "gene_reaction_rule": ""}, {"subsystem": "Murein Recycling", "name": "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide beta -1,4-N-acetylglucosaminidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGM4PH"]}, "metabolites": {"acgam_c": 1.0, "h2o_c": -1.0, "anhgm4p_c": -1.0, "anhm4p_c": 1.0}, "id": "AGM4PH", "gene_reaction_rule": "SF1111"}, {"subsystem": "Murein Recycling", "name": "GlcNAc-anhMurNAc tetrapeptide transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGM4Pt2pp"]}, "metabolites": {"anhgm4p_c": 1.0, "h_c": 1.0, "h_p": -1.0, "anhgm4p_p": -1.0}, "id": "AGM4Pt2pp", "gene_reaction_rule": "SF0377"}, {"subsystem": "Murein Recycling", "name": "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl beta -1,4-N-acetylglucosaminidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGMH"]}, "metabolites": {"acgam_c": 1.0, "anhm_c": 1.0, "h2o_c": -1.0, "anhgm_c": -1.0}, "id": "AGMH", "gene_reaction_rule": "SF1111"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "ADP-D-glycero-D-manno-heptose epimerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGMHE"]}, "metabolites": {"adphep_DD_c": -1.0, "adphep_LD_c": 1.0}, "id": "AGMHE", 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"Glycerophospholipid Metabolism", "name": "1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT120"]}, "metabolites": {"1ddecg3p_c": -1.0, "ACP_c": 1.0, "pa120_c": 1.0, "ddcaACP_c": -1.0}, "id": "AGPAT120", "gene_reaction_rule": "SF3062"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT140"]}, "metabolites": {"1tdecg3p_c": -1.0, "pa140_c": 1.0, "ACP_c": 1.0, "myrsACP_c": -1.0}, "id": "AGPAT140", "gene_reaction_rule": "SF3062"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AGPAT141"]}, "metabolites": {"tdeACP_c": -1.0, "pa141_c": 1.0, "ACP_c": 1.0, "1tdec7eg3p_c": -1.0}, 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-1000.0, "notes": {"original_bigg_ids": ["AKGt2rpp"]}, "metabolites": {"akg_c": 1.0, "akg_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "AKGt2rpp", "gene_reaction_rule": "SF2649"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Alpha-ketoglutarate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AKGtex"]}, "metabolites": {"akg_p": 1.0, "akg_e": -1.0}, "id": "AKGtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Murein Recycling", "name": "D-alanine-D-alanine dipeptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAALAD"]}, "metabolites": {"h2o_c": -1.0, "ala__D_c": 2.0, "alaala_c": -1.0}, "id": "ALAALAD", "gene_reaction_rule": "ddpX"}, {"subsystem": "Transport, Inner Membrane", "name": "D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAALAabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "alaala_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "alaala_c": 1.0}, "id": "ALAALAabcpp", "gene_reaction_rule": "SF3579 and SF3578 and SF3577 and SF3576 and SF3575"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "D-alanine-D-alanine ligase (reversible)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAALAr"]}, "metabolites": {"atp_c": -1.0, "ala__D_c": -2.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "alaala_c": 1.0}, "id": "ALAALAr", "gene_reaction_rule": "SF0232 or SF0089"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-alanyl-D-alanine (DalaDala) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAALAtex"]}, "metabolites": {"alaala_e": -1.0, "alaala_p": 1.0}, "id": "ALAALAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Murein Recycling", "name": "L-alanyl-gamma-glutamate epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAGLUE"]}, "metabolites": {"LalaDglu_c": -1.0, "LalaLglu_c": 1.0}, "id": "ALAGLUE", "gene_reaction_rule": "SF1331"}, {"subsystem": "Alanine and Aspartate Metabolism", "name": "Alanine racemase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAR"]}, "metabolites": {"ala__D_c": 1.0, "ala__L_c": -1.0}, "id": "ALAR", "gene_reaction_rule": "SF1179 or SF4152"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "D-alanine transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALATA_D2"]}, "metabolites": {"ala__D_c": -1.0, "pyr_c": 1.0, "pydx5p_c": -1.0, "pyam5p_c": 1.0}, "id": "ALATA_D2", "gene_reaction_rule": "SF2598 or SF0825"}, {"subsystem": "Alanine and Aspartate Metabolism", "name": "L-alanine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALATA_L"]}, "metabolites": {"akg_c": -1.0, "glu__L_c": 1.0, "ala__L_c": -1.0, "pyr_c": 1.0}, "id": "ALATA_L", "gene_reaction_rule": "SF2366 or SF2445"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Alanine transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALATA_L2"]}, "metabolites": {"pydx5p_c": -1.0, "pyam5p_c": 1.0, "ala__L_c": -1.0, "pyr_c": 1.0}, "id": "ALATA_L2", "gene_reaction_rule": "SF0825 or SF2598"}, {"subsystem": "tRNA Charging", "name": "Alanyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALATRS"]}, "metabolites": {"trnaala_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "ala__L_c": -1.0, "amp_c": 1.0, "alatrna_c": 1.0}, "id": "ALATRS", "gene_reaction_rule": "SF2720"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "ala__L_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "ala__L_p": -1.0}, "id": "ALAabcpp", "gene_reaction_rule": "SF3472 and SF3473 and SF3475 and SF3478 and SF3474"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALAt2pp", "ALAt2rpp"]}, "metabolites": {"ala__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "ala__L_p": -1.0}, "id": "ALAt2pp_copy1", "gene_reaction_rule": "SF4278"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAt2pp", "ALAt2rpp"]}, "metabolites": {"ala__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "ala__L_p": -1.0}, "id": "ALAt2pp_copy2", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-alanine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALAtex"]}, "metabolites": {"ala__L_e": -1.0, "ala__L_p": 1.0}, "id": "ALAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Pyruvate Metabolism", "name": "Alcohol dehydrogenase (ethanol)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALCD2x"]}, "metabolites": {"acald_c": 1.0, "nadh_c": 1.0, "etoh_c": -1.0, "nad_c": -1.0, "h_c": 1.0}, "id": "ALCD2x", "gene_reaction_rule": "SF1747 or SF1240"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (acetaldehyde, NAD)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD2x"]}, "metabolites": {"h2o_c": -1.0, "acald_c": -1.0, "h_c": 2.0, "nad_c": -1.0, "ac_c": 1.0, "nadh_c": 1.0}, "id": "ALDD2x", "gene_reaction_rule": "SF1305"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (acetaldehyde, NADP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD2y"]}, "metabolites": {"h2o_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "acald_c": -1.0, "h_c": 2.0, "ac_c": 1.0}, "id": "ALDD2y", "gene_reaction_rule": "SF3626"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (propanal, NADP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD3y"]}, "metabolites": {"h2o_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "ppa_c": 1.0, "ppal_c": -1.0, "h_c": 2.0}, "id": "ALDD3y", "gene_reaction_rule": "SF3626"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldehyde dehydrogenase (butanal, NAD)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALDD4"]}, "metabolites": {"h2o_c": -1.0, "btal_c": -1.0, "but_c": 1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "ALDD4", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Allantoate amidohydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALLTAMH"]}, "metabolites": {"alltt_c": -1.0, "urdglyc_c": 1.0, "h2o_c": -2.0, "h_c": -2.0, "co2_c": 1.0, "nh4_c": 2.0}, "id": "ALLTAMH", "gene_reaction_rule": "SF0450"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Allantoin transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALLTNtex"]}, "metabolites": {"alltn_e": -1.0, "alltn_p": 1.0}, "id": "ALLTNtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Allose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ALLtex"]}, "metabolites": {"all__D_p": 1.0, "all__D_e": -1.0}, "id": "ALLtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Unassigned", "name": "Apolipoprotein N-acyltransferase (phosphatidylethanolamine, periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALPATE160pp"]}, "metabolites": {"alpp_p": -1.0, "lpp_p": 1.0, "2agpe160_p": 1.0, "pe160_p": -1.0}, "id": "ALPATE160pp", "gene_reaction_rule": "SF0625 and SF1706"}, {"subsystem": "Unassigned", "name": "Apolipoprotein N-acyltransferase (phosphatidylglycerol, periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALPATG160pp"]}, "metabolites": {"alpp_p": -1.0, "pg160_p": -1.0, "2agpg160_p": 1.0, "lpp_p": 1.0}, "id": "ALPATG160pp", "gene_reaction_rule": "SF0625 and SF1706"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Aldose reductase (methylglyoxal)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALR2"]}, "metabolites": {"nadph_c": -1.0, "nadp_c": 1.0, "acetol_c": 1.0, "h_c": -1.0, "mthgxl_c": -1.0}, "id": "ALR2", "gene_reaction_rule": "SF3057 or SF0192 or SF1442 or SF3047"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Altronate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALTRH"]}, "metabolites": {"h2o_c": 1.0, "2ddglcn_c": 1.0, "altrn_c": -1.0}, "id": "ALTRH", "gene_reaction_rule": "SF3131"}, {"subsystem": "Murein Recycling", "name": "Anhydrous-N-Acetylmuramyl-tripeptide amidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AM3PA"]}, "metabolites": {"anhm_c": 1.0, "h2o_c": -1.0, "LalaDgluMdap_c": 1.0, "anhm3p_c": -1.0}, "id": "AM3PA", "gene_reaction_rule": "SF0107"}, {"subsystem": "Murein Recycling", "name": "Anhydrous-N-Acetylmuramyl-tetrapeptide amidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AM4PA"]}, "metabolites": {"anhm_c": 1.0, "anhm4p_c": -1.0, "h2o_c": -1.0, "LalaDgluMdapDala_c": 1.0}, "id": "AM4PA", "gene_reaction_rule": "SF0107"}, {"subsystem": "Murein Recycling", "name": "Anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AM4PCP"]}, "metabolites": {"h2o_c": -1.0, "ala__D_c": 1.0, "anhm4p_c": -1.0, "anhm3p_c": 1.0}, "id": "AM4PCP", "gene_reaction_rule": "SF1182"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Amylomaltase (maltotriose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMALT1"]}, "metabolites": {"glc__D_c": 1.0, "malt_c": -1.0, "malttr_c": -1.0, "maltttr_c": 1.0}, "id": "AMALT1", "gene_reaction_rule": "SF3439"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Amylomaltase (maltotetraose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMALT2"]}, "metabolites": {"maltpt_c": 1.0, "glc__D_c": 1.0, "malt_c": -1.0, "maltttr_c": -1.0}, "id": "AMALT2", "gene_reaction_rule": "SF3439"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Amylomaltase (maltopentaose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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"atp_c": -1.0, "adp_c": 1.0, "h_c": 1.0}, "id": "AMANK", "gene_reaction_rule": "SF3258"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Adenosylmethionine-8-amino-7-oxononanoate transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AMAOTr"]}, "metabolites": {"8aonn_c": -1.0, "amet_c": -1.0, "amob_c": 1.0, "dann_c": 1.0}, "id": "AMAOTr", "gene_reaction_rule": "SF0725"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "S-adenosylmethione:2-demthylmenaquinole methyltransferase (menaquinone 8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMMQLT8"]}, "metabolites": {"amet_c": -1.0, "ahcys_c": 1.0, "2dmmql8_c": -1.0, "h_c": 1.0, "mql8_c": 1.0}, "id": "AMMQLT8", "gene_reaction_rule": "SF3911"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "4-amino-2-methyl-5-phosphomethylpyrimidine synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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"ppi_c": 1.0, "h_c": -1.0, "atp_c": -2.0}, "id": "AP4AS", "gene_reaction_rule": "SF2876"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Ap5A hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AP5AH"]}, "metabolites": {"h_c": 2.0, "h2o_c": -1.0, "ap5a_c": -1.0, "adp_c": 1.0, "atp_c": 1.0}, "id": "AP5AH", "gene_reaction_rule": "SF0046"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Aminopropylcadaverine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APCS"]}, "metabolites": {"15dap_c": -1.0, "ametam_c": -1.0, "5mta_c": 1.0, "h_c": 1.0, "na15dap_c": 1.0}, "id": "APCS", "gene_reaction_rule": "SF0118"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT120"]}, "metabolites": {"1ddecg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, 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["APG3PAT160"]}, "metabolites": {"1hdecg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "hdcap_c": -1.0, "h_c": 1.0}, "id": "APG3PAT160", "gene_reaction_rule": "SF3100"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT161"]}, "metabolites": {"1hdec9eg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "hdceap_c": -1.0}, "id": "APG3PAT161", "gene_reaction_rule": "SF3100"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT180"]}, "metabolites": {"glyc3p_c": -1.0, "pi_c": 1.0, "ocdcap_c": -1.0, "h_c": 1.0, "1odecg3p_c": 1.0}, "id": "APG3PAT180", "gene_reaction_rule": "SF3100"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APG3PAT181"]}, "metabolites": {"1odec11eg3p_c": 1.0, "glyc3p_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "ocdceap_c": -1.0}, "id": "APG3PAT181", "gene_reaction_rule": "SF3100"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acylphosphatase (C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APH120"]}, "metabolites": {"ddca_c": 1.0, "ddcap_c": -1.0, "h2o_c": -1.0, "pi_c": 1.0, "h_c": 2.0}, "id": "APH120", "gene_reaction_rule": "SF0969"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acylphosphatase (C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APH140"]}, "metabolites": {"ttdca_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0, "ttdcap_c": -1.0, "h_c": 2.0}, "id": "APH140", "gene_reaction_rule": "SF0969"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acylphosphatase (C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, 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-1.0, "pi_c": 1.0, "ocdcap_c": -1.0, "h_c": 2.0, "ocdca_c": 1.0}, "id": "APH180", "gene_reaction_rule": "SF0969"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Acylphosphatase (C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APH181"]}, "metabolites": {"ocdcea_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0, "h_c": 2.0, "ocdceap_c": -1.0}, "id": "APH181", "gene_reaction_rule": "SF0969"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "5-amino-6-(5-phosphoribosylamino)uracil reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["APRAUR"]}, "metabolites": {"5apru_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "5aprbu_c": 1.0, "h_c": -1.0}, "id": "APRAUR", "gene_reaction_rule": "SF0351"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Aerobactin reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTNR1"]}, "metabolites": {"arbtn_fe3_c": -2.0, 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["ARBTNtonex"]}, "metabolites": {"arbtn_fe3_p": 1.0, "arbtn_fe3_e": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ARBTNtonex", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Aerobactin secretion (to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTNtpp"]}, "metabolites": {"h_p": -1.0, "h_c": 1.0, "arbtn_c": -1.0, "arbtn_p": 1.0}, "id": "ARBTNtpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "Arbutin transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTptspp"]}, "metabolites": {"pep_c": -1.0, "arbt_p": -1.0, "pyr_c": 1.0, "arbt6p_c": 1.0}, "id": "ARBTptspp", "gene_reaction_rule": "SF3733 and SF2470 and SF2471"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Arbutin transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBTtex"]}, "metabolites": {"arbt_p": 1.0, "arbt_e": -1.0}, "id": "ARBTtex", "gene_reaction_rule": "SF2299 or SF1823 or SF0289 or SF0926"}, {"subsystem": "Transport, Inner Membrane", "name": "L-arabinose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ARBt2rpp"]}, "metabolites": {"h_p": -1.0, "h_c": 1.0, "arab__L_p": -1.0, "arab__L_c": 1.0}, "id": "ARBt2rpp", "gene_reaction_rule": "SF2851"}, {"subsystem": "Transport, Inner Membrane", "name": "L-arabinose transport via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ARBt3ipp"]}, "metabolites": {"h_c": 1.0, "arab__L_p": 1.0, "h_p": -1.0, "arab__L_c": -1.0}, "id": "ARBt3ipp", "gene_reaction_rule": "SF1566"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-arabinose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": 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"metabolites": {"h2o_c": 1.0, "h_p": -4.0, "atp_c": 1.0, "h_c": 3.0, "adp_c": -1.0, "pi_c": -1.0}, "id": "ATPS4rpp", "gene_reaction_rule": "((SF3816 and SF3817 and SF3818) and (SF3811 and SF3812 and SF3813 and SF3814 and SF3815) and SF3819) or ((SF3816 and SF3817 and SF3818) and (SF3811 and SF3812 and SF3813 and SF3814 and SF3815))"}, {"subsystem": "Transport, Inner Membrane", "name": "Beta-alanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["BALAt2pp"]}, "metabolites": {"ala_B_p": -1.0, "ala_B_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "BALAt2pp", "gene_reaction_rule": "SF4278"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Beta-alanine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["BALAtex"]}, "metabolites": {"ala_B_e": -1.0, "ala_B_p": 1.0}, "id": "BALAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or 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"Carbamoyl-phosphate synthase (glutamine-hydrolysing)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CBPS"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -2.0, "hco3_c": -1.0, "glu__L_c": 1.0, "cbp_c": 1.0, "h_c": 2.0, "adp_c": 2.0, "pi_c": 1.0, "gln__L_c": -1.0}, "id": "CBPS", "gene_reaction_rule": "SF0029 and SF0030"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "7-cyano-7-carbaguanine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CCGS"]}, "metabolites": {"preq0_c": 1.0, "h2o_c": 1.0, "cdg_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "nh4_c": -1.0}, "id": "CCGS", "gene_reaction_rule": "SF0389"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cadmium (Cd+2) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CD2abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cd2_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "cd2_p": 1.0}, "id": "CD2abcpp", "gene_reaction_rule": "SF3487"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cadmium (Cd+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CD2t3pp"]}, "metabolites": {"cd2_c": -1.0, "cd2_p": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "CD2t3pp", "gene_reaction_rule": "SF3993 or SF0552"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cadmium (Cd+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CD2tex"]}, "metabolites": {"cd2_e": -1.0, "cd2_p": 1.0}, "id": "CD2tex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cadmium (+2) transport in via permease (no H+)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CD2tpp"]}, "metabolites": {"cd2_p": -1.0, "cd2_c": 1.0}, "id": "CD2tpp", "gene_reaction_rule": "SF3080"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA120"]}, "metabolites": {"h_c": 2.0, "cdpdddecg_c": -1.0, "h2o_c": -1.0, "pa120_c": 1.0, "cmp_c": 1.0}, "id": "CDAPPA120", "gene_reaction_rule": "SF3996"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA140"]}, "metabolites": {"cdpdtdecg_c": -1.0, "h2o_c": -1.0, "pa140_c": 1.0, "h_c": 2.0, "cmp_c": 1.0}, "id": "CDAPPA140", "gene_reaction_rule": "SF3996"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA141"]}, "metabolites": {"pa141_c": 1.0, "h2o_c": -1.0, "cdpdtdec7eg_c": -1.0, "h_c": 2.0, "cmp_c": 1.0}, "id": "CDAPPA141", "gene_reaction_rule": "SF3996"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA160"]}, "metabolites": {"h_c": 2.0, "pa160_c": 1.0, "h2o_c": -1.0, "cdpdhdecg_c": -1.0, "cmp_c": 1.0}, "id": "CDAPPA160", "gene_reaction_rule": "SF3996"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA161"]}, "metabolites": {"pa161_c": 1.0, "h2o_c": -1.0, "cdpdhdec9eg_c": -1.0, "h_c": 2.0, "cmp_c": 1.0}, "id": "CDAPPA161", "gene_reaction_rule": "SF3996"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA180"]}, "metabolites": {"h_c": 2.0, "cdpdodecg_c": -1.0, "cmp_c": 1.0, "h2o_c": -1.0, "pa180_c": 1.0}, "id": "CDAPPA180", "gene_reaction_rule": "SF3996"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "CDP-Diacylglycerol pyrophostatase (n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDAPPA181"]}, "metabolites": {"h_c": 2.0, "h2o_c": -1.0, "cdpdodec11eg_c": -1.0, "pa181_c": 1.0, "cmp_c": 1.0}, "id": "CDAPPA181", "gene_reaction_rule": "SF3996"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "7-cyano-7-deazaguanine reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDGR"]}, "metabolites": {"preq1_c": 1.0, "preq0_c": -1.0, "nadp_c": 2.0, "nadph_c": -2.0, "h_c": -3.0}, "id": "CDGR", "gene_reaction_rule": "SF2807"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "7-deaza-7-carboxyguanine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDGS"]}, "metabolites": {"cdg_c": 1.0, "cph4_c": -1.0, "nh4_c": 1.0, "h_c": -1.0}, "id": "CDGS", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CDPMEK"]}, "metabolites": {"2p4c2me_c": 1.0, "4c2me_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "CDPMEK", "gene_reaction_rule": "SF1211"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CFAS160E"]}, "metabolites": {"amet_c": -2.0, "cpe160_c": 1.0, "pe161_c": -1.0, "h_c": 2.0, "ahcys_c": 2.0}, "id": "CFAS160E", "gene_reaction_rule": "SF1689"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 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transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CGLYabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cgly_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "cgly_c": 1.0}, "id": "CGLYabcpp", "gene_reaction_rule": "SF3579 and SF3578 and SF3577 and SF3576 and SF3575"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-Cysteinylglycine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CGLYtex"]}, "metabolites": {"cgly_e": -1.0, "cgly_p": 1.0}, "id": "CGLYtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Choline transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHLabcpp"]}, "metabolites": {"h2o_c": -1.0, "chol_p": -1.0, "atp_c": -1.0, "chol_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CHLabcpp", "gene_reaction_rule": "SF2213 and SF2214 and SF2215 and SF2216"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Choline transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CHLtex"]}, "metabolites": {"chol_p": 1.0, "chol_e": -1.0}, "id": "CHLtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Chorismate mutase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHORM"]}, "metabolites": {"chor_c": -1.0, "pphn_c": 1.0}, "id": "CHORM", "gene_reaction_rule": "SF2659 or SF2660"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Chorismate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHORS"]}, "metabolites": {"chor_c": 1.0, "pi_c": 1.0, "3psme_c": -1.0}, "id": "CHORS", "gene_reaction_rule": 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"CYANST", "gene_reaction_rule": "SF3447"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Cyanide sulfurtransferase (periplasmic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYANSTpp"]}, "metabolites": {"so3_p": 1.0, "tcynt_p": 1.0, "h_p": 1.0, "cyan_p": -1.0, "tsul_p": -1.0}, "id": "CYANSTpp", "gene_reaction_rule": "SF1313"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cyanide transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYANtex"]}, "metabolites": {"cyan_e": -1.0, "cyan_p": 1.0}, "id": "CYANtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cyanate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYNTtex"]}, "metabolites": {"cynt_p": 1.0, "cynt_e": -1.0}, "id": "CYNTtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cysteine Metabolism", "name": "D-cysteine desulfhydrase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSDDS"]}, "metabolites": {"cys__D_c": -1.0, "h2o_c": -1.0, "pyr_c": 1.0, "nh4_c": 1.0, "h2s_c": 1.0}, "id": "CYSDDS", "gene_reaction_rule": "SF1962"}, {"subsystem": "Cysteine Metabolism", "name": "Cysteine Desulfhydrase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSDS"]}, "metabolites": {"cys__L_c": -1.0, "h2o_c": -1.0, "pyr_c": 1.0, "nh4_c": 1.0, "h2s_c": 1.0}, "id": "CYSDS", "gene_reaction_rule": "SF3754 or SF3053"}, {"subsystem": "Transport, Inner Membrane", "name": "D-cysteine uptake via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSDabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "cys__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "cys__D_c": 1.0, "pi_c": 1.0}, "id": "CYSDabcpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-cysteine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYSDtex"]}, "metabolites": {"cys__D_p": 1.0, "cys__D_e": -1.0}, "id": "CYSDtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cysteine Metabolism", "name": "Cysteine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSS"]}, "metabolites": {"cys__L_c": 1.0, "ac_c": 1.0, "acser_c": -1.0, "h_c": 1.0, "h2s_c": -1.0}, "id": "CYSS", "gene_reaction_rule": "SF2469 or SF2476"}, {"subsystem": "Cysteine Metabolism", "name": "L-cysteine sulfinic acid desulfurase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSSADS"]}, "metabolites": {"so2_c": 1.0, "ala__L_c": 1.0, "h_c": -2.0, "3sala_c": -1.0}, "id": "CYSSADS", "gene_reaction_rule": "SF2824"}, {"subsystem": "Methionine Metabolism", "name": "Cystathionine b-lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSTL"]}, "metabolites": {"hcys__L_c": 1.0, "h2o_c": -1.0, "pyr_c": 1.0, "nh4_c": 1.0, "cyst__L_c": -1.0}, "id": "CYSTL", "gene_reaction_rule": "SF1647 or SF3053"}, {"subsystem": "tRNA Charging", "name": "Cysteinyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSTRS"]}, "metabolites": {"cys__L_c": -1.0, "atp_c": -1.0, "cystrna_c": 1.0, "ppi_c": 1.0, "amp_c": 1.0, "trnacys_c": -1.0}, "id": "CYSTRS", "gene_reaction_rule": "SF0457"}, {"subsystem": "Transport, Inner Membrane", "name": "L-cysteine export via ABC system (cytoplasm to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSabc2pp"]}, "metabolites": {"cys__L_c": -1.0, "h2o_c": -1.0, "atp_c": -1.0, "cys__L_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CYSabc2pp", "gene_reaction_rule": "SF0845 and SF0846"}, {"subsystem": "Transport, Inner Membrane", "name": "L-cysteine uptake via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYSabcpp"]}, "metabolites": {"cys__L_c": 1.0, "h2o_c": -1.0, "atp_c": -1.0, "cys__L_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "CYSabcpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-cysteine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYStex"]}, "metabolites": {"cys__L_p": 1.0, "cys__L_e": -1.0}, "id": "CYStex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "L-cysteine export via facilitated transport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYStpp"]}, "metabolites": {"cys__L_c": -1.0, "cys__L_p": 1.0}, "id": "CYStpp", "gene_reaction_rule": "SF2640 or SF1561"}, {"subsystem": "Oxidative Phosphorylation", "name": "Cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTBD2pp"]}, "metabolites": {"o2_c": -0.5, "h2o_c": 1.0, "mqn8_c": 1.0, "h_p": 2.0, "h_c": -2.0, "mql8_c": -1.0}, "id": "CYTBD2pp", "gene_reaction_rule": "SF0980 and SF0981"}, {"subsystem": "Oxidative Phosphorylation", "name": "Cytochrome oxidase bd (ubiquinol-8: 2 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTBDpp"]}, "metabolites": {"o2_c": -0.5, "h2o_c": 1.0, "h_p": 2.0, "q8h2_c": -1.0, "h_c": -2.0, "q8_c": 1.0}, "id": "CYTBDpp", "gene_reaction_rule": "SF0980 and SF0981"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidine deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTD"]}, "metabolites": {"cytd_c": -1.0, "uri_c": 1.0, "h2o_c": -1.0, "nh4_c": 1.0, "h_c": -1.0}, "id": "CYTD", "gene_reaction_rule": "SF2228"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Cytidine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTDH"]}, "metabolites": {"cytd_c": -1.0, "h2o_c": -1.0, "csn_c": 1.0, "rib__D_c": 1.0}, "id": "CYTDH", "gene_reaction_rule": "SF2247 or SF0630 or SF0027"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidine kinase (GTP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTDK2"]}, "metabolites": {"cytd_c": -1.0, "gdp_c": 1.0, "gtp_c": -1.0, "h_c": 1.0, "cmp_c": 1.0}, "id": "CYTDK2", "gene_reaction_rule": "SF2130"}, {"subsystem": "Transport, Inner Membrane", "name": "Cytidine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYTDt2pp", "CYTDt2rpp"]}, "metabolites": {"cytd_c": 1.0, "cytd_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "CYTDt2pp_copy1", "gene_reaction_rule": "SF2458 or SF2961"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Cytidine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYTDtex"]}, "metabolites": {"cytd_p": 1.0, "cytd_e": -1.0}, "id": "CYTDtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidylate kinase (CMP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYTK1"]}, "metabolites": {"cdp_c": 1.0, "atp_c": -1.0, "adp_c": 1.0, "cmp_c": -1.0}, "id": "CYTK1", "gene_reaction_rule": "SF0906"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Cytidylate kinase (dCMP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYTK2"]}, "metabolites": {"dcmp_c": -1.0, "atp_c": -1.0, "adp_c": 1.0, "dcdp_c": 1.0}, "id": "CYTK2", "gene_reaction_rule": "SF0906"}, {"subsystem": "Transport, Inner Membrane", "name": "D-lactate transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["D_DASH_LACt2pp"]}, "metabolites": {"lac__D_c": 1.0, "h_c": 1.0, "h_p": -1.0, "lac__D_p": -1.0}, "id": "D_LACt2pp", "gene_reaction_rule": "SF3642 or SF3014"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-lactate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["D_DASH_LACtex"]}, "metabolites": {"lac__D_e": -1.0, "lac__D_p": 1.0}, "id": "D_LACtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alanine and Aspartate Metabolism", "name": "D-Amino acid dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAAD"]}, "metabolites": {"h2o_c": -1.0, "pyr_c": 1.0, "fadh2_c": 1.0, "ala__D_c": -1.0, "nh4_c": 1.0, "fad_c": -1.0}, "id": "DAAD", "gene_reaction_rule": "SF1178"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Deoxyadenosine deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DADA"]}, "metabolites": {"din_c": 1.0, "dad_2_c": -1.0, "h2o_c": -1.0, "nh4_c": 1.0, "h_c": -1.0}, "id": "DADA", "gene_reaction_rule": "SF1648"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Deoxyadenylate kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DADK", "DAMPK"]}, "metabolites": {"dadp_c": 1.0, "damp_c": -1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "DADK_copy1", "gene_reaction_rule": "SF0419"}, {"subsystem": "Transport, Inner Membrane", "name": "Deoxyadenosine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DADNt2pp"]}, "metabolites": {"dad_2_c": 1.0, "dad_2_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DADNt2pp", "gene_reaction_rule": "SF2961 or SF2458"}, {"subsystem": "Transport, Outer Membrane", "name": "Deoxyadenosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DADNtex"]}, "metabolites": {"dad_2_p": 1.0, "dad_2_e": -1.0}, "id": "DADNtex", "gene_reaction_rule": "SF0348"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Diacylglycerol kinase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAGK120"]}, "metabolites": {"pa120_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "12dgr120_c": -1.0}, "id": "DAGK120", "gene_reaction_rule": "SF4163"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Diacylglycerol kinase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAGK140"]}, "metabolites": {"pa140_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "12dgr140_c": -1.0}, "id": "DAGK140", "gene_reaction_rule": "SF4163"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Diacylglycerol kinase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAGK141"]}, "metabolites": {"pa141_c": 1.0, "12dgr141_c": -1.0, "atp_c": -1.0, "adp_c": 1.0, "h_c": 1.0}, "id": "DAGK141", "gene_reaction_rule": "SF4163"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Diacylglycerol kinase (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAGK160"]}, "metabolites": {"pa160_c": 1.0, "12dgr160_c": -1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "DAGK160", "gene_reaction_rule": "SF4163"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Diacylglycerol kinase (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DAGK161"]}, "metabolites": {"pa161_c": 1.0, "12dgr161_c": -1.0, "atp_c": -1.0, "adp_c": 1.0, "h_c": 1.0}, "id": "DAGK161", "gene_reaction_rule": "SF4163"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Diacylglycerol kinase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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"2dh3dgal6p_c": 1.0, "2dh3dgal_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "DDGALK", "gene_reaction_rule": "SF3770"}, {"subsystem": "Transport, Inner Membrane", "name": "2-dehydro-3-deoxy-D-gluconate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DDGLCNt2rpp"]}, "metabolites": {"2ddglcn_p": -1.0, "2ddglcn_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DDGLCNt2rpp", "gene_reaction_rule": "SF3986"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "2-dehydro-3-deoxy-D-gluconate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DDGLCNtex"]}, "metabolites": {"2ddglcn_p": 1.0, "2ddglcn_e": -1.0}, "id": "DDGLCNtex", "gene_reaction_rule": "SF0926 or SF1823 or SF2299 or SF0289"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-dehydro-3-deoxygluconokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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(2,3-dihydroxy-3-methylbutanoate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHAD1"]}, "metabolites": {"h2o_c": 1.0, "23dhmb_c": -1.0, "3mob_c": 1.0}, "id": "DHAD1", "gene_reaction_rule": "SF3846"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHAD2"]}, "metabolites": {"23dhmp_c": -1.0, "3mop_c": 1.0, "h2o_c": 1.0}, "id": "DHAD2", "gene_reaction_rule": "SF3846"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Dihydroxyacetone phosphotransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHAPT"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "dhap_c": 1.0, "dha_c": -1.0}, "id": "DHAPT", "gene_reaction_rule": "SF1203 and SF1202 and SF1201 and SF2470 and SF2471"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Dihydroxyacetone transport via 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adenylate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHBS"]}, "metabolites": {"23dhba_c": 1.0, "23dhb_c": -1.0, "ppi_c": 1.0, "h_c": -1.0, "atp_c": -1.0}, "id": "DHBS", "gene_reaction_rule": "SF0508"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "2,3-dihydroxybenzoylserine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHBSH"]}, "metabolites": {"23dhb_c": 1.0, "ser__L_c": 1.0, "h2o_c": -1.0, "23dhbzs_c": -1.0}, "id": "DHBSH", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,3-dihydroxycinnamate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHCIND"]}, "metabolites": {"dhcinnm_c": 1.0, "nadh_c": 1.0, "cenchddd_c": -1.0, "nad_c": -1.0, "h_c": 1.0}, "id": "DHCIND", "gene_reaction_rule": "SF2588"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Dihydrodipicolinate reductase (NADPH)", 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"Dihydroneopterin epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHNPTE"]}, "metabolites": {"dhnpt_c": -1.0, "dhmpt_c": 1.0}, "id": "DHNPTE", "gene_reaction_rule": "SF3099"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Dihydoorotic acid dehydrogenase (quinone8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHORD2"]}, "metabolites": {"q8h2_c": 1.0, "dhor__S_c": -1.0, "q8_c": -1.0, "orot_c": 1.0}, "id": "DHORD2", "gene_reaction_rule": "SF0946"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Dihydroorotic acid (menaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHORD5"]}, "metabolites": {"dhor__S_c": -1.0, "mqn8_c": -1.0, "mql8_c": 1.0, "orot_c": 1.0}, "id": "DHORD5", "gene_reaction_rule": "SF0946"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Fumarate dependent DHORD", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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["DHPPDA2"]}, "metabolites": {"5apru_c": 1.0, "h2o_c": -1.0, "nh4_c": 1.0, "25drapp_c": -1.0, "h_c": -1.0}, "id": "DHPPDA2", "gene_reaction_rule": "SF0351"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydropteroate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPS2"]}, "metabolites": {"dhpt_c": 1.0, "6hmhptpp_c": -1.0, "ppi_c": 1.0, "4abz_c": -1.0}, "id": "DHPS2", "gene_reaction_rule": "SF3217"}, {"subsystem": "Methionine Metabolism", "name": "4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPTDCs2"]}, "metabolites": {"dhptd_c": -1.0, "mdhdhf_c": 1.0}, "id": "DHPTDCs2", "gene_reaction_rule": "s0001"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Dihydropteridine reductase", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPTDNR"]}, "metabolites": {"dhptdn_c": -1.0, "thptdn_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -3.0}, "id": "DHPTDNR", "gene_reaction_rule": "nfsB"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Dihydropteridine reductase (NADH)", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPTDNRN"]}, "metabolites": {"thptdn_c": 1.0, "dhptdn_c": -1.0, "nadh_c": -1.0, "h_c": -3.0, "nad_c": 1.0}, "id": "DHPTDNRN", "gene_reaction_rule": "nfsB"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydroneopterin triphosphate 2'-epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DHPTPE"]}, "metabolites": {"dhmptp_c": 1.0, "ahdt_c": -1.0}, "id": "DHPTPE", "gene_reaction_rule": "SF2379"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "3-dehydroquinate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHQS"]}, "metabolites": {"2dda7p_c": -1.0, "pi_c": 1.0, "3dhq_c": 1.0}, "id": "DHQS", "gene_reaction_rule": "SF3407"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "3-dehydroquinate dehydratase, irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHQTi"]}, "metabolites": {"3dhsk_c": 1.0, "h2o_c": 1.0, "3dhq_c": -1.0}, "id": "DHQTi", "gene_reaction_rule": "SF1723"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "DIMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DIMPtex"]}, "metabolites": {"dimp_p": 1.0, "dimp_e": -1.0}, "id": "DIMPtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Deoxyinosine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DINSt2pp"]}, "metabolites": {"din_p": -1.0, "din_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DINSt2pp", "gene_reaction_rule": "SF2961"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Deoxyinosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DINStex"]}, "metabolites": {"din_p": 1.0, "din_e": -1.0}, "id": "DINStex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,5-diketo-D-gluconate reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DKGLCNR1"]}, "metabolites": {"25dkglcn_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "2dhguln_c": 1.0}, "id": "DKGLCNR1", "gene_reaction_rule": "SF0192 or SF3057"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,5-diketo-D-gluconate reductase (NADH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DKGLCNR2x"]}, "metabolites": {"25dkglcn_c": -1.0, "nadh_c": -1.0, "5dglcn_c": 1.0, "h_c": -1.0, "nad_c": 1.0}, "id": "DKGLCNR2x", "gene_reaction_rule": "SF3587"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,5-diketo-D-gluconate reductase (NADPH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DKGLCNR2y"]}, "metabolites": {"nadph_c": -1.0, "25dkglcn_c": -1.0, "nadp_c": 1.0, "5dglcn_c": 1.0, "h_c": -1.0}, "id": "DKGLCNR2y", "gene_reaction_rule": "SF3587"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dimethylallyltranstransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMATT"]}, "metabolites": {"dmpp_c": -1.0, "ppi_c": 1.0, "ipdp_c": -1.0, "grdp_c": 1.0}, "id": "DMATT", "gene_reaction_rule": "SF0358"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMPPS"]}, "metabolites": {"h2o_c": 1.0, "dmpp_c": 1.0, "h2mb4p_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "nadh_c": -1.0}, "id": "DMPPS", "gene_reaction_rule": "SF0026"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "3-Dimethylubiquinonol 3-methyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMQMT"]}, "metabolites": {"amet_c": -1.0, "2omhmbl_c": -1.0, "ahcys_c": 1.0, "h_c": 1.0, "q8h2_c": 1.0}, "id": "DMQMT", "gene_reaction_rule": "SF2312"}, {"subsystem": "Oxidative Phosphorylation", "name": "Dimethyl sulfoxide reductase (Menaquinol 8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMSOR1"]}, "metabolites": {"h2o_c": 1.0, "dms_c": 1.0, "mqn8_c": 1.0, "dmso_c": -1.0, "mql8_c": -1.0}, "id": "DMSOR1", "gene_reaction_rule": "ynfE and ynfF and SF1610 and SF1611"}, {"subsystem": "Oxidative Phosphorylation", "name": "Dimethyl sulfoxide reductase (Menaquinol 8) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMSOR1pp"]}, "metabolites": {"dmso_p": -1.0, 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"notes": {"original_bigg_ids": ["DMSOtpp"]}, "metabolites": {"dmso_p": -1.0, "dmso_c": 1.0}, "id": "DMSOtpp", "gene_reaction_rule": "s0001"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Dimethyl sulfide transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DMStex"]}, "metabolites": {"dms_p": 1.0, "dms_e": -1.0}, "id": "DMStex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydroneopterin monophosphate dephosphorylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DNMPPA"]}, "metabolites": {"h2o_c": -1.0, "dhnpt_c": 1.0, "pi_c": 1.0, "dhpmp_c": -1.0}, "id": "DNMPPA", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dihydroneopterin triphosphate pyrophosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DNTPPA"]}, "metabolites": {"h_c": 1.0, "h2o_c": -1.0, "ppi_c": 1.0, "dhpmp_c": 1.0, "ahdt_c": -1.0}, "id": "DNTPPA", "gene_reaction_rule": "SF0096 or SF1875"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2,3 dioxo-L-gulonate reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DOGULNR"]}, "metabolites": {"nadh_c": -1.0, "23doguln_c": -1.0, "3dhguln_c": 1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "DOGULNR", "gene_reaction_rule": "SF3619"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Dopamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DOPAtex"]}, "metabolites": {"dopa_e": -1.0, "dopa_p": 1.0}, "id": "DOPAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Doxorubicin transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DOXRBCNtex"]}, "metabolites": {"doxrbcn_e": -1.0, "doxrbcn_p": 1.0}, "id": "DOXRBCNtex", "gene_reaction_rule": "SF1823 or SF2299 or SF0926 or SF0289"}, {"subsystem": "Transport, Outer Membrane", "name": "Doxorubicin transport via TolC system", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DOXRBCNtpp"]}, "metabolites": {"doxrbcn_e": 1.0, "doxrbcn_p": -1.0, "h_p": -1.0, "h_c": 1.0}, "id": "DOXRBCNtpp", "gene_reaction_rule": "SF0408 and SF2512 and SF3075"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Dephospho-CoA kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DPCOAK"]}, "metabolites": {"dpcoa_c": -1.0, "coa_c": 1.0, "atp_c": -1.0, "adp_c": 1.0, "h_c": 1.0}, "id": "DPCOAK", "gene_reaction_rule": "SF0100"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "2-dehydropantoate 2-reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DPR"]}, "metabolites": {"pant__R_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "2dhp_c": -1.0}, "id": "DPR", "gene_reaction_rule": "SF0362 or SF3848"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Deoxyribose-phosphate aldolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DRPA"]}, "metabolites": {"acald_c": 1.0, "g3p_c": 1.0, "2dr5p_c": -1.0}, "id": "DRPA", "gene_reaction_rule": "SF4413"}, {"subsystem": "Unassigned", "name": "DsbA protein reoxidation reaction (aerobic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DSBAO1"]}, "metabolites": {"q8h2_c": 1.0, "dsbaox_p": 1.0, "q8_c": -1.0, "dsbard_p": -1.0}, "id": "DSBAO1", "gene_reaction_rule": "SF3931 and SF1174"}, {"subsystem": "Unassigned", "name": "DsbA protein reoxidation reaction (anaerobic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DSBAO2"]}, "metabolites": 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"gene_reaction_rule": "SF0523"}, {"subsystem": "Glycine and Serine Metabolism", "name": "D-serine dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DSERDHr"]}, "metabolites": {"2amsa_c": 1.0, "ser__D_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0}, "id": "DSERDHr", "gene_reaction_rule": "SF1556"}, {"subsystem": "Transport, Inner Membrane", "name": "D-serine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DSERt2pp"]}, "metabolites": {"ser__D_p": -1.0, "ser__D_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DSERt2pp", "gene_reaction_rule": "SF4278"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-serine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DSERtex"]}, "metabolites": {"ser__D_p": 1.0, "ser__D_e": -1.0}, "id": "DSERtex", "gene_reaction_rule": "SF0289 or SF0926 or 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"name": "Ethanolamine transport in via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ETHAt2pp"]}, "metabolites": {"etha_c": 1.0, "h_c": 1.0, "h_p": -1.0, "etha_p": -1.0}, "id": "ETHAt2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Ethanolamine transport via diffusion (extracellular)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ETHAtex"]}, "metabolites": {"etha_e": -1.0, "etha_p": 1.0}, "id": "ETHAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Ethanesulfonate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ETHSO3abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "ethso3_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "ethso3_p": -1.0}, "id": "ETHSO3abcpp", "gene_reaction_rule": "SF0935 and SF0930 and ssuC"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Ethanesulfonate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ETHSO3tex"]}, "metabolites": {"ethso3_e": -1.0, "ethso3_p": 1.0}, "id": "ETHSO3tex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Ethanol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ETOHtex"]}, "metabolites": {"etoh_e": -1.0, "etoh_p": 1.0}, "id": "ETOHtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Ethanol reversible transport via diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ETOHtrpp"]}, "metabolites": {"etoh_p": -1.0, "etoh_c": 1.0}, "id": "ETOHtrpp", "gene_reaction_rule": "s0001"}, 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"Aminomethyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FOMETRi"]}, "metabolites": {"5fthf_c": -1.0, "h2o_c": 1.0, "methf_c": 1.0, "h_c": -1.0}, "id": "FOMETRi", "gene_reaction_rule": "SF2897"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Formyl-CoA Transferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["FORCT"]}, "metabolites": {"oxa_c": -1.0, "oxalcoa_c": 1.0, "for_c": 1.0, "forcoa_c": -1.0}, "id": "FORCT", "gene_reaction_rule": "SF2441"}, {"subsystem": "Transport, Inner Membrane", "name": "Formate transport via proton symport (uptake only, periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FORt2pp"]}, "metabolites": {"h_p": -1.0, "for_p": -1.0, "for_c": 1.0, "h_c": 1.0}, "id": "FORt2pp", "gene_reaction_rule": "SF0899"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Formate transport via diffusion (extracellular to periplasm)", "upper_bound": 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(C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT141"]}, "metabolites": {"tdeACP_c": -1.0, "glyc3p_c": -1.0, "ACP_c": 1.0, "1tdec7eg3p_c": 1.0}, "id": "G3PAT141", "gene_reaction_rule": "SF1098 and SF4164"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT160"]}, "metabolites": {"glyc3p_c": -1.0, "ACP_c": 1.0, "1hdecg3p_c": 1.0, "palmACP_c": -1.0}, "id": "G3PAT160", "gene_reaction_rule": "SF1098 and SF4164"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT161"]}, "metabolites": {"1hdec9eg3p_c": 1.0, "glyc3p_c": -1.0, "ACP_c": 1.0, "hdeACP_c": -1.0}, "id": "G3PAT161", "gene_reaction_rule": "SF1098 and SF4164"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT180"]}, "metabolites": {"ocdcaACP_c": -1.0, "ACP_c": 1.0, "glyc3p_c": -1.0, "1odecg3p_c": 1.0}, "id": "G3PAT180", "gene_reaction_rule": "SF1098 and SF4164"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerol-3-phosphate acyltransferase (C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PAT181"]}, "metabolites": {"1odec11eg3p_c": 1.0, "octeACP_c": -1.0, "ACP_c": 1.0, "glyc3p_c": -1.0}, "id": "G3PAT181", "gene_reaction_rule": "SF1098 and SF4164"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycero-3-phosphocholine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PCtex"]}, "metabolites": {"g3pc_e": -1.0, "g3pc_p": 1.0}, "id": "G3PCtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glycerol-3-phosphate dehydrogenase (NADP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PD2"]}, "metabolites": {"glyc3p_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0, "dhap_c": 1.0}, "id": "G3PD2", "gene_reaction_rule": "SF3647"}, {"subsystem": "Oxidative Phosphorylation", "name": "Glycerol-3-phosphate dehydrogenase (ubiquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PD5"]}, "metabolites": {"q8h2_c": 1.0, "glyc3p_c": -1.0, "dhap_c": 1.0, "q8_c": -1.0}, "id": "G3PD5", "gene_reaction_rule": "(SF2323 and SF2324 and SF2325) or SF3448"}, {"subsystem": "Oxidative Phosphorylation", "name": "Glycerol-3-phosphate dehydrogenase (menaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PD6"]}, "metabolites": {"glyc3p_c": -1.0, "dhap_c": 1.0, "mqn8_c": -1.0, "mql8_c": 1.0}, "id": "G3PD6", "gene_reaction_rule": "SF2323 and SF2324 and SF2325"}, {"subsystem": "Oxidative Phosphorylation", "name": "Glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PD7"]}, "metabolites": {"glyc3p_c": -1.0, "dhap_c": 1.0, "2dmmq8_c": -1.0, "2dmmql8_c": 1.0}, "id": "G3PD7", "gene_reaction_rule": "SF2323 and SF2324 and SF2325"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycero-3-phosphoethanolamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PEtex"]}, "metabolites": {"g3pe_e": -1.0, "g3pe_p": 1.0}, "id": "G3PEtex", "gene_reaction_rule": "SF0926 or SF1823 or SF2299 or SF0289"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycerophoglycerol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PGtex"]}, "metabolites": {"g3pg_p": 1.0, "g3pg_e": -1.0}, "id": "G3PGtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycero-3-phospho-1-inositol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PItex"]}, "metabolites": {"g3pi_p": 1.0, "g3pi_e": -1.0}, "id": "G3PItex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycerophosphserine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G3PStex"]}, "metabolites": {"g3ps_e": -1.0, "g3ps_p": 1.0}, "id": "G3PStex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glycerol-3-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G3PT"]}, "metabolites": {"glyc3p_c": -1.0, "h2o_c": -1.0, "pi_c": 1.0, "glyc_c": 1.0}, "id": "G3PT", "gene_reaction_rule": "SF0772"}, {"subsystem": "Arginine and Proline Metabolism", "name": "L-glutamate 5-semialdehyde dehydratase (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G5SADs"]}, "metabolites": {"1pyr5c_c": 1.0, "glu5sa_c": -1.0, "h2o_c": 1.0, "h_c": 1.0}, "id": "G5SADs", "gene_reaction_rule": "s0001"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Glutamate-5-semialdehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G5SD"]}, "metabolites": {"glu5sa_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "pi_c": 1.0, "glu5p_c": -1.0}, "id": "G5SD", "gene_reaction_rule": "SF0293"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glucosamine-6-phosphate deaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G6PDA"]}, "metabolites": {"gam6p_c": -1.0, "nh4_c": 1.0, "h2o_c": -1.0, "f6p_c": 1.0}, "id": "G6PDA", "gene_reaction_rule": "SF0615"}, {"subsystem": "Pentose Phosphate Pathway", "name": "Glucose 6-phosphate dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G6PDH2r"]}, "metabolites": {"g6p_c": -1.0, "6pgl_c": 1.0, "nadph_c": 1.0, "h_c": 1.0, "nadp_c": -1.0}, "id": "G6PDH2r", "gene_reaction_rule": "SF1862"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glucose-6-phosphate phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G6PP"]}, "metabolites": {"glc__D_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0, "g6p_c": -1.0}, "id": "G6PP", "gene_reaction_rule": "SF0772"}, {"subsystem": "Transport, Inner Membrane", "name": "Glucose-6-phosphate transport via phosphate antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["G6Pt6_2pp"]}, "metabolites": {"pi_p": 2.0, "g6p_p": -1.0, "g6p_c": 1.0, "pi_c": -2.0}, "id": "G6Pt6_2pp", "gene_reaction_rule": "SF3795"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glucose 6-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["G6Ptex"]}, "metabolites": {"g6p_p": 1.0, "g6p_e": -1.0}, "id": "G6Ptex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "D-galactose 1-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GAL1PPpp"]}, "metabolites": {"gal_p": 1.0, "pi_p": 1.0, "gal1p_p": -1.0, "h2o_p": -1.0}, "id": "GAL1PPpp", "gene_reaction_rule": "SF1006"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-galactose 1-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GAL1Ptex"]}, "metabolites": {"gal1p_e": -1.0, "gal1p_p": 1.0}, "id": "GAL1Ptex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Beta D-galactose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALBDtex"]}, "metabolites": {"gal_bD_e": -1.0, "gal_bD_p": 1.0}, "id": "GALBDtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Galactarate dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALCTD"]}, "metabolites": {"h2o_c": 1.0, "5dh4dglc_c": 1.0, "galct__D_c": -1.0}, "id": "GALCTD", "gene_reaction_rule": "SF3165"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Galactonate dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALCTND"]}, "metabolites": {"galctn__D_c": -1.0, "h2o_c": 1.0, "2dh3dgal_c": 1.0}, "id": "GALCTND", "gene_reaction_rule": "dgoD"}, {"subsystem": "Transport, Inner Membrane", "name": "L-galactonate transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALCTNLt2pp"]}, "metabolites": {"galctn__L_c": 1.0, "galctn__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GALCTNLt2pp", "gene_reaction_rule": "SF4387"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-galactonate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALCTNLtex"]}, "metabolites": {"galctn__L_p": 1.0, "galctn__L_e": -1.0}, "id": "GALCTNLtex", "gene_reaction_rule": "SF2299 or SF1823 or SF0926 or SF0289"}, {"subsystem": "Transport, Inner Membrane", "name": "D-galactonate transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALCTNt2pp"]}, "metabolites": {"galctn__D_c": 1.0, "galctn__D_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GALCTNt2pp", "gene_reaction_rule": "SF3772"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-galactonate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALCTNtex"]}, "metabolites": {"galctn__D_p": 1.0, "galctn__D_e": -1.0}, "id": "GALCTNtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "D-galactarte transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALCTt2rpp"]}, "metabolites": {"galct__D_p": -1.0, "galct__D_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "GALCTt2rpp", "gene_reaction_rule": "SF2802 or SF3164"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-galactarte transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALCTtex"]}, "metabolites": {"galct__D_e": -1.0, "galct__D_p": 1.0}, "id": "GALCTtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Galactokinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALKr"]}, "metabolites": {"adp_c": 1.0, "gal_c": -1.0, "h_c": 1.0, "gal1p_c": 1.0, "atp_c": -1.0}, "id": "GALKr", "gene_reaction_rule": "SF2108 or SF0547"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Aldose-1-epimerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALM2pp"]}, "metabolites": {"gal_p": 1.0, "gal_bD_p": -1.0}, "id": "GALM2pp", "gene_reaction_rule": "SF0548"}, {"subsystem": "Alternate Carbon Metabolism", "name": "A-galactosidase (melibiose)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALS3"]}, "metabolites": {"glc__D_c": 1.0, "melib_c": -1.0, "gal_c": 1.0, "h2o_c": -1.0}, "id": "GALS3", "gene_reaction_rule": "SF4104"}, {"subsystem": "Transport, Inner Membrane", "name": "Galactitol transport via PEP:Pyr PTS (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALTptspp"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "galt1p_c": 1.0, "galt_p": -1.0}, "id": "GALTptspp", "gene_reaction_rule": "SF2156 and SF2155 and SF2154 and SF2470 and SF2471"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Galactitol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALTtex"]}, "metabolites": {"galt_e": -1.0, "galt_p": 1.0}, "id": "GALTtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "D-galacturonate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALURt2rpp"]}, "metabolites": {"galur_c": 1.0, "h_c": 1.0, "h_p": -1.0, "galur_p": -1.0}, "id": "GALURt2rpp", "gene_reaction_rule": "SF3133"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-galacturonate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GALURtex"]}, "metabolites": {"galur_e": -1.0, "galur_p": 1.0}, "id": "GALURtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UTP-glucose-1-phosphate uridylyltransferase (irreversible)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALUi"]}, "metabolites": {"utp_c": -1.0, "ppi_c": 1.0, "udpg_c": 1.0, "h_c": -1.0, "g1p_c": -1.0}, "id": "GALUi", "gene_reaction_rule": "SF1236"}, {"subsystem": "Transport, Inner Membrane", "name": "D-galactose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "gal_c": 1.0, "h_c": 1.0, "adp_c": 1.0, 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"GDP-4-dehydro-6-deoxy-D-mannose epimerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GDMANE"]}, "metabolites": {"gdpddman_c": -1.0, "gdpofuc_c": 1.0}, "id": "GDMANE", "gene_reaction_rule": "SF2115"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "GDP diphosphokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GDPDPK"]}, "metabolites": {"ppgpp_c": 1.0, "gdp_c": -1.0, "amp_c": 1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "GDPDPK", "gene_reaction_rule": "SF2797 or SF3690"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "GDP-mannose mannosyl hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GDPMNH"]}, "metabolites": {"gdpmann_c": -1.0, "gdp_c": 1.0, "h_c": 1.0, "h2o_c": -1.0, "man_c": 1.0}, "id": "GDPMNH", "gene_reaction_rule": "SF2114"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "GDP-mannose phyrophosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GDPMNP"]}, "metabolites": {"h2o_c": -1.0, "gmp_c": 1.0, "man1p_c": 1.0, "gdpmann_c": -1.0, "h_c": 2.0}, "id": "GDPMNP", "gene_reaction_rule": "SF2509"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GDPTPDP"]}, "metabolites": {"gdptp_c": -1.0, "ppi_c": 1.0, "gtp_c": 1.0, "h2o_c": -1.0}, "id": "GDPTPDP", "gene_reaction_rule": "SF3690"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "GDP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GDPtex"]}, "metabolites": {"gdp_e": -1.0, "gdp_p": 1.0}, "id": "GDPtex", "gene_reaction_rule": "SF1823 or SF2299 or SF0926 or SF0289"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Glutamine-fructose-6-phosphate transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GF6PTA"]}, "metabolites": {"glu__L_c": 1.0, "f6p_c": -1.0, "gam6p_c": 1.0, "gln__L_c": -1.0}, "id": "GF6PTA", "gene_reaction_rule": "SF3809"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Gamma-glutamyl-gamma aminobutyric acid dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GGGABADr"]}, "metabolites": {"h2o_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "gg4abut_c": 1.0, "h_c": 2.0, "ggbutal_c": -1.0}, "id": "GGGABADr", "gene_reaction_rule": "SF1305"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Gamma-glutamyl-gamma-aminobutyric acid hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GGGABAH"]}, "metabolites": {"h2o_c": -1.0, "gg4abut_c": -1.0, "glu__L_c": 1.0, "4abut_c": 1.0}, "id": "GGGABAH", "gene_reaction_rule": "SF1303"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Gamma glutamyl putrescine oxidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GGPTRCO"]}, "metabolites": {"o2_c": -1.0, "h2o_c": -1.0, "ggptrc_c": -1.0, "h2o2_c": 1.0, "nh4_c": 1.0, "ggbutal_c": 1.0}, "id": "GGPTRCO", "gene_reaction_rule": "SF1306"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Gamma glutamyl putrescine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GGPTRCS"]}, "metabolites": {"atp_c": -1.0, "ggptrc_c": 1.0, "glu__L_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "ptrc_c": -1.0, "pi_c": 1.0}, "id": "GGPTRCS", "gene_reaction_rule": "SF1302"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Gamma-hydroxybutyrate dehydrogenase (NADH)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GHBDHx"]}, "metabolites": {"sucsal_c": -1.0, "nadh_c": -1.0, "ghb_c": 1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "GHBDHx", "gene_reaction_rule": "SF3954"}, {"subsystem": "Glycine and Serine Metabolism", "name": "Glycine 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-1000.0, "notes": {"original_bigg_ids": ["GLCATr"]}, "metabolites": {"glc__D_c": -1.0, "acglc__D_c": 1.0, "coa_c": 1.0, "accoa_c": -1.0}, "id": "GLCATr", "gene_reaction_rule": "maa"}, {"subsystem": "Oxidative Phosphorylation", "name": "Glucose dehydrogenase (ubiquinone-8 as acceptor) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCDpp"]}, "metabolites": {"glcn_p": 1.0, "h_p": 1.0, "q8h2_c": 1.0, "glc__D_p": -1.0, "h2o_p": -1.0, "q8_c": -1.0}, "id": "GLCDpp", "gene_reaction_rule": "SF0121 or SF0787"}, {"subsystem": "Transport, Inner Membrane", "name": "D-gluconate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCNt2rpp"]}, "metabolites": {"glcn_p": -1.0, "glcn_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GLCNt2rpp", "gene_reaction_rule": "SF4199 or SF3458 or SF3438"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-gluconate transport via 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{"subsystem": "Transport, Outer Membrane Porin", "name": "Glucose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLCtex", "GLCtexi"]}, "metabolites": {"glc__D_p": 1.0, "glc__D_e": -1.0}, "id": "GLCtex_copy1", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane", "name": "Glucose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCtex", "GLCtexi"]}, "metabolites": {"glc__D_p": 1.0, "glc__D_e": -1.0}, "id": "GLCtex_copy2", "gene_reaction_rule": "SF4169"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Glycogen debranching enzyme (bglycogen -> glycogen)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLDBRAN2"]}, "metabolites": {"bglycogen_c": -1.0, "glycogen_c": 1.0}, "id": "GLDBRAN2", "gene_reaction_rule": "SF3454"}, {"subsystem": 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"Glutaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUNpp"]}, "metabolites": {"glu__L_p": 1.0, "gln__L_p": -1.0, "nh4_p": 1.0, "h2o_p": -1.0}, "id": "GLUNpp", "gene_reaction_rule": "SF2954"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Glutamine phosphoribosyldiphosphate amidotransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUPRT"]}, "metabolites": {"pram_c": 1.0, "h2o_c": -1.0, "ppi_c": 1.0, "glu__L_c": 1.0, "prpp_c": -1.0, "gln__L_c": -1.0}, "id": "GLUPRT", "gene_reaction_rule": "SF2388"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Glutamate racemase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLUR"]}, "metabolites": {"glu__D_c": -1.0, "glu__L_c": 1.0}, "id": "GLUR", "gene_reaction_rule": "SF4049"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Glutamyl-tRNA reductase", "upper_bound": 1000.0, "lower_bound": 0.0, 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"name": "L-glutamate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLUt2rpp"]}, "metabolites": {"glu__L_p": -1.0, "glu__L_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GLUt2rpp", "gene_reaction_rule": "SF4137"}, {"subsystem": "Transport, Inner Membrane", "name": "Na+/glutamate symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLUt4pp"]}, "metabolites": {"na1_p": -1.0, "glu__L_p": -1.0, "glu__L_c": 1.0, "na1_c": 1.0}, "id": "GLUt4pp", "gene_reaction_rule": "SF3693"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-glutamate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLUtex"]}, "metabolites": {"glu__L_p": 1.0, "glu__L_e": -1.0}, "id": "GLUtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Glyoxylate Metabolism", "name": "Glyoxalate carboligase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLXCL"]}, "metabolites": {"co2_c": 1.0, "glx_c": -2.0, "h_c": -1.0, "2h3oppan_c": 1.0}, "id": "GLXCL", "gene_reaction_rule": "SF0446"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glyceraldehyde transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYALDtex"]}, "metabolites": {"glyald_e": -1.0, "glyald_p": 1.0}, "id": "GLYALDtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Glyceraldehyde facilitated diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYALDtpp"]}, "metabolites": {"glyald_c": 1.0, "glyald_p": -1.0}, "id": "GLYALDtpp", "gene_reaction_rule": "SF4005"}, {"subsystem": "Glycine and Serine Metabolism", "name": "Glycine C-acetyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYAT"]}, "metabolites": {"coa_c": 1.0, "2aobut_c": 1.0, "accoa_c": -1.0, "gly_c": -1.0}, "id": "GLYAT", "gene_reaction_rule": "SF3657"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycine betaine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYBabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "glyb_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "glyb_p": -1.0}, "id": "GLYBabcpp", "gene_reaction_rule": "SF2213 and SF2214 and SF2215 and SF2216"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycine betaine transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYBt2pp", "GLYBt6pp"]}, "metabolites": {"glyb_c": 1.0, "h_c": 1.0, "h_p": -1.0, "glyb_p": -1.0}, "id": "GLYBt2pp_copy1", "gene_reaction_rule": "SF4112"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycine betaine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYBtex"]}, "metabolites": {"glyb_e": -1.0, "glyb_p": 1.0}, "id": "GLYBtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycerol-2-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYC2Ptex"]}, "metabolites": {"glyc2p_e": -1.0, "glyc2p_p": 1.0}, "id": "GLYC2Ptex", "gene_reaction_rule": "SF2299 or SF0289 or SF0926 or SF1823"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycerol-3-phosphate : phosphate antiporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYC3Pt6pp"]}, "metabolites": {"pi_p": 1.0, "glyc3p_p": -1.0, "glyc3p_c": 1.0, "pi_c": -1.0}, "id": "GLYC3Pt6pp", "gene_reaction_rule": "SF2322"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycerol-3-phosphate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYC3Ptex"]}, "metabolites": {"glyc3p_p": 1.0, "glyc3p_e": -1.0}, "id": "GLYC3Ptex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "D-glycerate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYCAt2rpp"]}, "metabolites": {"glyc__R_c": 1.0, "h_c": 1.0, "h_p": -1.0, "glyc__R_p": -1.0}, "id": "GLYCAt2rpp", "gene_reaction_rule": "SF2802 or SF3164"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-glycerate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYCAtex"]}, "metabolites": {"glyc__R_e": -1.0, "glyc__R_p": 1.0}, "id": "GLYCAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Glycine and Serine Metabolism", "name": "Glycerate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYCK2"]}, "metabolites": {"h_c": 1.0, "glyc__R_c": -1.0, "2pg_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "GLYCK2", "gene_reaction_rule": "SF3161"}, {"subsystem": "Folate Metabolism", "name": "Glycine Cleavage System", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYCL"]}, "metabolites": {"nadh_c": 1.0, "mlthf_c": 1.0, "nh4_c": 1.0, "thf_c": -1.0, "nad_c": -1.0, "co2_c": 1.0, "gly_c": -1.0}, "id": "GLYCL", "gene_reaction_rule": "SF2890 and SF2889 and SF2891 and SF0113"}, {"subsystem": "Glyoxylate Metabolism", "name": "Glycolate dehydrogenase (NAD)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYCLTDx"]}, "metabolites": {"glyclt_c": 1.0, "nadh_c": -1.0, "glx_c": -1.0, "h_c": -1.0, "nad_c": 1.0}, "id": "GLYCLTDx", "gene_reaction_rule": "SF3587 or ghrA"}, {"subsystem": "Glyoxylate Metabolism", "name": "Glycolate dehydrogenase (NADP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYCLTDy"]}, "metabolites": {"glyclt_c": 1.0, "nadp_c": 1.0, "glx_c": -1.0, "h_c": -1.0, "nadph_c": -1.0}, "id": "GLYCLTDy", "gene_reaction_rule": "ghrA or SF3587"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycolate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYCLTt2rpp"]}, "metabolites": {"glyclt_p": -1.0, "glyclt_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GLYCLTt2rpp", "gene_reaction_rule": "SF3642 or SF3014"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycolate transport via sodium symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYCLTt4pp"]}, "metabolites": {"glyclt_p": -1.0, "na1_p": -1.0, "glyclt_c": 1.0, "na1_c": 1.0}, "id": "GLYCLTt4pp", "gene_reaction_rule": "SF4127"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycolate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYCLTtex"]}, "metabolites": {"glyclt_p": 1.0, "glyclt_e": -1.0}, "id": "GLYCLTtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycerol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYCtex"]}, "metabolites": {"glyc_e": -1.0, "glyc_p": 1.0}, "id": "GLYCtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycerol transport via channel (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYCtpp"]}, "metabolites": {"glyc_c": -1.0, "glyc_p": 1.0}, "id": "GLYCtpp", "gene_reaction_rule": "SF4005 or s0001"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glycerol kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYK"]}, "metabolites": {"h_c": 1.0, "glyc3p_c": 1.0, "glyc_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "GLYK", "gene_reaction_rule": "SF4004"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Hydroxyacylglutathione hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYOX"]}, "metabolites": {"gthrd_c": 1.0, "h2o_c": -1.0, "lac__D_c": 1.0, "lgt__S_c": -1.0, "h_c": 1.0}, "id": "GLYOX", "gene_reaction_rule": "SF0198"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Glyoxalase III", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYOX3"]}, "metabolites": {"h2o_c": -1.0, "lac__D_c": 1.0, "h_c": 1.0, "mthgxl_c": -1.0}, "id": "GLYOX3", "gene_reaction_rule": ""}, {"subsystem": "tRNA Charging", "name": "Glycyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYTRS"]}, "metabolites": {"glytrna_c": 1.0, "atp_c": -1.0, "ppi_c": 1.0, "trnagly_c": -1.0, "amp_c": 1.0, "gly_c": -1.0}, "id": "GLYTRS", "gene_reaction_rule": "SF3602 and SF3603"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLYt2pp", "GLYt2rpp"]}, "metabolites": {"gly_p": -1.0, "h_c": 1.0, "h_p": -1.0, "gly_c": 1.0}, "id": "GLYt2pp_copy1", "gene_reaction_rule": "SF4278"}, {"subsystem": "Transport, Inner Membrane", "name": "Glycine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYt2pp", "GLYt2rpp"]}, "metabolites": {"gly_p": -1.0, "h_c": 1.0, "h_p": -1.0, "gly_c": 1.0}, "id": "GLYt2pp_copy2", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Glycine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYtex"]}, "metabolites": {"gly_e": -1.0, "gly_p": 1.0}, "id": "GLYtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "GDP-D-mannose dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GMAND"]}, "metabolites": {"gdpmann_c": -1.0, "gdpddman_c": 1.0, "h2o_c": 1.0}, "id": "GMAND", "gene_reaction_rule": "SF2116"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "D-glycero-D-manno-hepose 1-phosphate adenyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GMHEPAT"]}, "metabolites": {"ppi_c": 1.0, "gmhep1p_c": -1.0, "adphep_DD_c": 1.0, "h_c": -1.0, "atp_c": -1.0}, "id": "GMHEPAT", "gene_reaction_rule": "SF3093"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "D-glycero-D-manno-heptose 7-phosphate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GMHEPK"]}, "metabolites": {"adp_c": 1.0, "gmhep17bp_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "gmhep7p_c": -1.0}, "id": "GMHEPK", "gene_reaction_rule": "SF3093"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GMHEPPA"]}, "metabolites": {"h2o_c": -1.0, "gmhep1p_c": 1.0, "gmhep17bp_c": -1.0, "pi_c": 1.0}, "id": "GMHEPPA", "gene_reaction_rule": "SF0191"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "GMP reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GMPR"]}, "metabolites": {"gmp_c": -1.0, "nadph_c": -1.0, "imp_c": 1.0, "nadp_c": 1.0, "h_c": -2.0, "nh4_c": 1.0}, "id": "GMPR", "gene_reaction_rule": "SF0101"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "GMP synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GMPS2"]}, "metabolites": {"xmp_c": -1.0, "h2o_c": -1.0, "gmp_c": 1.0, "atp_c": -1.0, "h_c": 2.0, "ppi_c": 1.0, "amp_c": 1.0, "glu__L_c": 1.0, "gln__L_c": -1.0}, "id": "GMPS2", "gene_reaction_rule": "SF2553"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "GMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GMPtex"]}, "metabolites": {"gmp_p": 1.0, "gmp_e": -1.0}, "id": "GMPtex", "gene_reaction_rule": "SF1823 or SF2299 or SF0289 or SF0926"}, {"subsystem": "Pentose Phosphate Pathway", "name": "Phosphogluconate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GND"]}, "metabolites": {"6pgc_c": -1.0, "nadph_c": 1.0, "nadp_c": -1.0, "co2_c": 1.0, "ru5p__D_c": 1.0}, "id": "GND", "gene_reaction_rule": "SF2091"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Gluconokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GNK"]}, "metabolites": {"6pgc_c": 1.0, "glcn_c": -1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "GNK", "gene_reaction_rule": "SF3459"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "GDP-4-oxo-L-fucose reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GOFUCR"]}, "metabolites": {"gdpfuc_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "gdpofuc_c": -1.0}, "id": "GOFUCR", "gene_reaction_rule": "SF2115"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Gp4G hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GP4GH"]}, "metabolites": {"h2o_c": -1.0, "gdp_c": 2.0, "gp4g_c": -1.0, "h_c": 2.0}, "id": "GP4GH", "gene_reaction_rule": "SF0046"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerophosphodiester phosphodiesterase (Glycerophosphocholine)", "upper_bound": 1000.0, "lower_bound": 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"Glycerophospholipid Metabolism", "name": "Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GPDDA4"]}, "metabolites": {"g3pg_c": -1.0, "glyc3p_c": 1.0, "glyc_c": 1.0, "h2o_c": -1.0, "h_c": 1.0}, "id": "GPDDA4", "gene_reaction_rule": "SF3466"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GPDDA4pp"]}, "metabolites": {"glyc3p_p": 1.0, "g3pg_p": -1.0, "glyc_p": 1.0, "h_p": 1.0, "h2o_p": -1.0}, "id": "GPDDA4pp", "gene_reaction_rule": "SF2321"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GPDDA5"]}, "metabolites": {"glyc3p_c": 1.0, "g3pi_c": -1.0, "inost_c": 1.0, "h2o_c": -1.0, "h_c": 1.0}, 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"Cofactor and Prosthetic Group Biosynthesis", "name": "Glutathione oxidoreductase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GTHOr"]}, "metabolites": {"nadph_c": -1.0, "nadp_c": 1.0, "gthrd_c": 2.0, "h_c": -1.0, "gthox_c": -1.0}, "id": "GTHOr", "gene_reaction_rule": "SF3531"}, {"subsystem": "Unassigned", "name": "Glutathione peridoxase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GTHPi", "GSHPO"]}, "metabolites": {"h2o2_c": -1.0, "h2o_c": 2.0, "gthrd_c": -2.0, "gthox_c": 1.0}, "id": "GTHPi_copy1", "gene_reaction_rule": "SF1521"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Glutathione hydralase (periplasmic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GTHRDHpp"]}, "metabolites": {"h2o_p": -1.0, "glu__L_p": 1.0, "cgly_p": 1.0, "gthrd_p": -1.0}, "id": "GTHRDHpp", "gene_reaction_rule": "SF3464"}, {"subsystem": "Transport, Inner Membrane", "name": "Glutathione 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"Transport, Inner Membrane", "name": "Guanine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GUAt2pp"]}, "metabolites": {"gua_p": -1.0, "gua_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "GUAt2pp", "gene_reaction_rule": "SF3694"}, {"subsystem": "Transport, Outer Membrane", "name": "Guanine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GUAtex"]}, "metabolites": {"gua_p": 1.0, "gua_e": -1.0}, "id": "GUAtex", "gene_reaction_rule": "SF0348"}, {"subsystem": "Transport, Inner Membrane", "name": "Guanine transport via diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GUAtpp"]}, "metabolites": {"gua_p": -1.0, "gua_c": 1.0}, "id": "GUAtpp", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Glucuronate isomerase (D-glucuronate)", "upper_bound": 1000.0, 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"id": "HCO3E", "gene_reaction_rule": "SF0123"}, {"subsystem": "Transport, Outer Membrane", "name": "Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HDCAtexi"]}, "metabolites": {"hdca_e": -1.0, "hdca_p": 1.0}, "id": "HDCAtexi", "gene_reaction_rule": "SF2421"}, {"subsystem": "Transport, Outer Membrane", "name": "Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HDCEAtexi"]}, "metabolites": {"hdcea_p": 1.0, "hdcea_e": -1.0}, "id": "HDCEAtexi", "gene_reaction_rule": "SF2421"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Heme O synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEMEOS"]}, "metabolites": {"h2o_c": -1.0, "hemeO_c": 1.0, "frdp_c": -1.0, "ppi_c": 1.0, "pheme_c": -1.0}, "id": "HEMEOS", "gene_reaction_rule": "SF0369"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "LPS heptose kinase I (LPS core synthesis)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEPK1"]}, "metabolites": {"hhlipa_c": -1.0, "phhlipa_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "HEPK1", "gene_reaction_rule": "SF3667"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Heptosyltransferase I (LPS core synthesis)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEPT1"]}, "metabolites": {"adp_c": 1.0, "lipa_c": -1.0, "hlipa_c": 1.0, "adphep_LD_c": -1.0, "h_c": 1.0}, "id": "HEPT1", "gene_reaction_rule": "SF3661"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Heptosyltransferase II (LPS core synthesis)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEPT2"]}, "metabolites": {"adp_c": 1.0, "hhlipa_c": 1.0, "hlipa_c": -1.0, "adphep_LD_c": -1.0, "h_c": 1.0}, "id": "HEPT2", "gene_reaction_rule": "SF3660"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Heptosyltransferase III (LPS core synthesis)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEPT3"]}, "metabolites": {"hphhlipa_c": 1.0, "phhlipa_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "adphep_LD_c": -1.0}, "id": "HEPT3", "gene_reaction_rule": "SF3669"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Hydroxyethylthiazole kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HETZK"]}, "metabolites": {"4mpetz_c": 1.0, "4mhetz_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "HETZK", "gene_reaction_rule": "SF2166"}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "Hexokinase (D-glucose:ATP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEX1"]}, "metabolites": {"glc__D_c": -1.0, "g6p_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "HEX1", "gene_reaction_rule": "SF2454"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Hexokinase (D-mannose:ATP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEX4"]}, "metabolites": {"adp_c": 1.0, "man6p_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "man_c": -1.0}, "id": "HEX4", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Hexokinase (D-fructose:ATP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HEX7"]}, "metabolites": {"adp_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "fru_c": -1.0, "f6p_c": 1.0}, "id": "HEX7", "gene_reaction_rule": "SF0330"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Mercury (Hg+2) ABC transporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HG2abcpp"]}, "metabolites": {"h2o_c": -1.0, "hg2_p": 1.0, "atp_c": -1.0, "hg2_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "HG2abcpp", "gene_reaction_rule": "SF3487"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Mercury (Hg+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HG2t3pp"]}, "metabolites": {"hg2_c": -1.0, "hg2_p": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "HG2t3pp", "gene_reaction_rule": "SF3993"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Mercury (Hg+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HG2tex"]}, "metabolites": {"hg2_p": 1.0, "hg2_e": -1.0}, "id": "HG2tex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Histidine Metabolism", "name": "Histidinol dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HISTD"]}, "metabolites": {"histd_c": -1.0, "h2o_c": -1.0, "his__L_c": 1.0, "h_c": 3.0, "nad_c": -2.0, "nadh_c": 2.0}, "id": "HISTD", "gene_reaction_rule": "SF2082"}, {"subsystem": "Histidine Metabolism", "name": "Histidinol-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HISTP"]}, "metabolites": {"hisp_c": -1.0, "histd_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0}, "id": "HISTP", "gene_reaction_rule": "SF2084"}, {"subsystem": "tRNA Charging", "name": "Histidyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HISTRS"]}, "metabolites": {"histrna_c": 1.0, "atp_c": -1.0, "his__L_c": -1.0, "ppi_c": 1.0, "trnahis_c": -1.0, "amp_c": 1.0}, "id": "HISTRS", "gene_reaction_rule": "SF2560"}, {"subsystem": "Transport, Inner Membrane", "name": "L-histidine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HISabcpp"]}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "atp_c": -1.0, "his__L_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "his__L_p": -1.0}, "id": "HISabcpp", "gene_reaction_rule": "SF2385 and 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"gene_reaction_rule": "SF3877"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Hydroxymethylpyrimidine kinase (ATP)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HMPK1"]}, "metabolites": {"h_c": 1.0, "4ampm_c": 1.0, "4ahmmp_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "HMPK1", "gene_reaction_rule": "SF2165 or SF2473"}, {"subsystem": "Transport, Inner Membrane", "name": "L-homoserineserine efflux via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HOMt2pp"]}, "metabolites": {"hom__L_c": -1.0, "hom__L_p": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "HOMt2pp", "gene_reaction_rule": "SF0764 or SF3902"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-homoserine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HOMtex"]}, "metabolites": {"hom__L_p": 1.0, "hom__L_e": -1.0}, "id": "HOMtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "6-hydroxymethyl-dihydropterin pyrophosphokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HPPK2"]}, "metabolites": {"6hmhptpp_c": 1.0, "6hmhpt_c": -1.0, "amp_c": 1.0, "atp_c": -1.0, "h_c": 1.0}, "id": "HPPK2", "gene_reaction_rule": "SF0134"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "3-(3-hydroxyphenyl)propionate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HPPPNtex"]}, "metabolites": {"3hpppn_e": -1.0, "3hpppn_p": 1.0}, "id": "HPPPNtex", "gene_reaction_rule": "SF0926 or SF1823 or SF2299 or SF0289"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Hydroxypyruvate isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HPYRI"]}, "metabolites": {"hpyr_c": -1.0, "2h3oppan_c": 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"Transport, Outer Membrane Porin", "name": "Hexanoate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HXAtex"]}, "metabolites": {"hxa_p": 1.0, "hxa_e": -1.0}, "id": "HXAtex", "gene_reaction_rule": "SF2299 or SF0289 or SF0926 or SF1823"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Hypoxanthine phosphoribosyltransferase (Hypoxanthine)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HXPRT"]}, "metabolites": {"ppi_c": 1.0, "imp_c": 1.0, "prpp_c": -1.0, "hxan_c": -1.0}, "id": "HXPRT", "gene_reaction_rule": "SF0286 or SF0122"}, {"subsystem": "Oxidative Phosphorylation", "name": "Hydrogenase (ubiquinone-8: 2 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HYD1pp"]}, "metabolites": {"q8h2_c": 1.0, "h2_c": -1.0, "q8_c": -1.0, "h_p": 2.0, "h_c": -2.0}, "id": "HYD1pp", "gene_reaction_rule": "(SF0973 and SF0974 and SF0975) 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{"original_bigg_ids": ["ICHORT"]}, "metabolites": {"h2o_c": -1.0, "pyr_c": 1.0, "ichor_c": -1.0, "23ddhb_c": 1.0}, "id": "ICHORT", "gene_reaction_rule": "SF0509"}, {"subsystem": "Anaplerotic Reactions", "name": "Isocitrate lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ICL"]}, "metabolites": {"succ_c": 1.0, "icit_c": -1.0, "glx_c": 1.0}, "id": "ICL", "gene_reaction_rule": "SF4081"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "ISC Cysteine desulfuration", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ICYSDS"]}, "metabolites": {"cys__L_c": -1.0, "ala__L_c": 1.0, "iscssh_c": 1.0, "iscs_c": -1.0}, "id": "ICYSDS", "gene_reaction_rule": "SF2577"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-idonate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IDONtex"]}, "metabolites": {"idon__L_p": 1.0, "idon__L_e": -1.0}, "id": "IDONtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Histidine Metabolism", "name": "Imidazole-glycerol-3-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IG3PS"]}, "metabolites": {"aicar_c": 1.0, "glu__L_c": 1.0, "eig3p_c": 1.0, "h_c": 1.0, "prlp_c": -1.0, "gln__L_c": -1.0}, "id": "IG3PS", "gene_reaction_rule": "SF2085 and SF2087"}, {"subsystem": "Histidine Metabolism", "name": "Imidazoleglycerol-phosphate dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IGPDH"]}, "metabolites": {"h2o_c": 1.0, "imacp_c": 1.0, "eig3p_c": -1.0}, "id": "IGPDH", "gene_reaction_rule": "SF2084"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Indole-3-glycerol-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IGPS"]}, "metabolites": {"h2o_c": 1.0, "co2_c": 1.0, "h_c": -1.0, "2cpr5p_c": -1.0, "3ig3p_c": 1.0}, "id": "IGPS", "gene_reaction_rule": "SF1265"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Isoleucine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ILETA"]}, "metabolites": {"akg_c": -1.0, "3mop_c": 1.0, "glu__L_c": 1.0, "ile__L_c": -1.0}, "id": "ILETA", "gene_reaction_rule": "SF3845"}, {"subsystem": "tRNA Charging", "name": "Isoleucyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ILETRS"]}, "metabolites": {"iletrna_c": 1.0, "trnaile_c": -1.0, "atp_c": -1.0, "ile__L_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0}, "id": "ILETRS", "gene_reaction_rule": "SF0022"}, {"subsystem": "Transport, Inner Membrane", "name": "L-isoleucine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ILEabcpp"]}, "metabolites": {"h2o_c": -1.0, "ile__L_p": -1.0, "atp_c": -1.0, "ile__L_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "ILEabcpp", "gene_reaction_rule": "SF3472 and SF3473 and SF3475 and SF3478 and SF3474"}, {"subsystem": "Transport, Inner Membrane", "name": "L-isoleucine reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ILEt2rpp"]}, "metabolites": {"ile__L_c": 1.0, "ile__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ILEt2rpp", "gene_reaction_rule": "SF0338"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-isoleucine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ILEtex"]}, "metabolites": {"ile__L_p": 1.0, "ile__L_e": -1.0}, "id": "ILEtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "IMP cyclohydrolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IMPC"]}, "metabolites": {"h2o_c": -1.0, "fprica_c": 1.0, "imp_c": -1.0}, "id": "IMPC", "gene_reaction_rule": "SF4078"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "IMP dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IMPD"]}, "metabolites": {"xmp_c": 1.0, "h2o_c": -1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0, "imp_c": -1.0}, "id": "IMPD", "gene_reaction_rule": "SF2554"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "IMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IMPtex"]}, "metabolites": {"imp_e": -1.0, "imp_p": 1.0}, "id": "IMPtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Indole transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INDOLEt2rpp"]}, "metabolites": {"indole_c": 1.0, "indole_p": -1.0, "h_p": -1.0, "h_c": 1.0}, "id": "INDOLEt2rpp", "gene_reaction_rule": "SF3202"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Indole transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INDOLEtex"]}, "metabolites": {"indole_e": -1.0, "indole_p": 1.0}, "id": "INDOLEtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Na+/myo-inositol symporter (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INOSTt4pp"]}, "metabolites": {"na1_p": -1.0, "na1_c": 1.0, "inost_c": 1.0, "inost_p": -1.0}, "id": "INOSTt4pp", "gene_reaction_rule": "SF3783"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Inosine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INSH"]}, "metabolites": {"h2o_c": -1.0, "hxan_c": 1.0, "rib__D_c": 1.0, "ins_c": -1.0}, "id": "INSH", "gene_reaction_rule": "SF0027"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Insosine kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INSK"]}, "metabolites": {"adp_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "imp_c": 1.0, "ins_c": -1.0}, "id": "INSK", "gene_reaction_rule": "SF0422"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Inositol transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INSTtex"]}, "metabolites": {"inost_e": -1.0, "inost_p": 1.0}, "id": "INSTtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Inosine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INSt2pp"]}, "metabolites": {"ins_p": -1.0, "h_c": 1.0, "h_p": -1.0, "ins_c": 1.0}, "id": "INSt2pp", "gene_reaction_rule": "SF2961"}, {"subsystem": "Transport, Outer Membrane", "name": "Inosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["INStex"]}, "metabolites": {"ins_e": -1.0, "ins_p": 1.0}, "id": "INStex", "gene_reaction_rule": "SF0348"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Isopentenyl-diphosphate D-isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IPDDI"]}, "metabolites": {"dmpp_c": 1.0, "ipdp_c": -1.0}, "id": "IPDDI", "gene_reaction_rule": "SF2875"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IPDPS"]}, "metabolites": {"h2o_c": 1.0, "ipdp_c": 1.0, "h2mb4p_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "nadh_c": -1.0}, "id": "IPDPS", "gene_reaction_rule": "SF0026"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "3-isopropylmalate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IPMD"]}, "metabolites": {"3c4mop_c": 1.0, "3c2hmp_c": -1.0, "nadh_c": 1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "IPMD", "gene_reaction_rule": "SF0068"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "3-isopropylmalate dehydratase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IPPMIa"]}, "metabolites": {"3c2hmp_c": -1.0, "h2o_c": 1.0, "2ippm_c": 1.0}, "id": "IPPMIa", "gene_reaction_rule": "SF0066 and SF0067"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "2-isopropylmalate hydratase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IPPMIb"]}, "metabolites": {"2ippm_c": -1.0, "h2o_c": -1.0, "3c3hmp_c": 1.0}, "id": "IPPMIb", "gene_reaction_rule": "SF0066 and SF0067"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "2-isopropylmalate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["IPPS"]}, "metabolites": {"h2o_c": -1.0, "accoa_c": -1.0, "3mob_c": -1.0, "coa_c": 1.0, "h_c": 1.0, "3c3hmp_c": 1.0}, "id": "IPPS", "gene_reaction_rule": "SF0069"}, {"subsystem": "Transport, Inner Membrane", "name": "Isethionate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ISETACabcpp"]}, "metabolites": {"isetac_c": 1.0, "h2o_c": -1.0, "atp_c": -1.0, "isetac_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "ISETACabcpp", "gene_reaction_rule": "(SF0253 and SF0252 and SF0251) or (SF0935 and SF0930 and ssuC)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Isethionate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ISETACtex"]}, "metabolites": {"isetac_p": 1.0, "isetac_e": -1.0}, "id": "ISETACtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "KDO(2)-lipid IV A transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["K2L4Aabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "kdo2lipid4_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "kdo2lipid4_c": -1.0, "pi_c": 1.0}, "id": "K2L4Aabcpp", "gene_reaction_rule": "SF0910"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "KDO(2)-lipid IV A transport via ABC system (periplasm to extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["K2L4Aabctex"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "kdo2lipid4_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "kdo2lipid4_e": 1.0}, "id": "K2L4Aabctex", "gene_reaction_rule": "SF3240 and SF3241 and SF3239 and SF4228 and SF4227"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["KARA1"]}, "metabolites": {"nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0, "23dhmb_c": -1.0, "alac__S_c": 1.0}, "id": "KARA1", "gene_reaction_rule": "SF3848"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Ketol-acid reductoisomerase (2-Acetolactate)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["KARA2"]}, "metabolites": {"23dhmp_c": 1.0, "2ahbut_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0}, "id": "KARA2", "gene_reaction_rule": "SF3848"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Beta-ketoacyl-ACP synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KAS14"]}, "metabolites": {"acACP_c": -1.0, "ACP_c": 1.0, "malACP_c": -1.0, "h_c": -1.0, "actACP_c": 1.0, "co2_c": 1.0}, "id": "KAS14", "gene_reaction_rule": "SF2399 or SF1099"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Beta-ketoacyl-ACP synthase (2)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KAS15"]}, "metabolites": {"malACP_c": -1.0, "coa_c": 1.0, "h_c": -1.0, "accoa_c": -1.0, "actACP_c": 1.0, "co2_c": 1.0}, "id": "KAS15", "gene_reaction_rule": "SF1095"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy-manno-octulosonate cytidylyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KDOCT2"]}, "metabolites": {"ctp_c": -1.0, "ckdo_c": 1.0, "ppi_c": 1.0, "kdo_c": -1.0}, "id": "KDOCT2", "gene_reaction_rule": "SF0914"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy-manno-octulosonate-8-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KDOPP"]}, "metabolites": {"kdo8p_c": -1.0, "h2o_c": -1.0, "kdo_c": 1.0, "pi_c": 1.0}, "id": "KDOPP", "gene_reaction_rule": "SF3238"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KDOPS"]}, "metabolites": {"ara5p_c": -1.0, "kdo8p_c": 1.0, "h2o_c": -1.0, "pi_c": 1.0, "pep_c": -1.0}, "id": "KDOPS", "gene_reaction_rule": "SF1218"}, {"subsystem": "Alternate Carbon Metabolism", "name": "3-keto-L-gulonate 6-phosphate decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["KG6PDC"]}, "metabolites": {"xu5p__L_c": 1.0, "3dhgulnp_c": -1.0, "co2_c": 1.0, "h_c": -1.0}, "id": "KG6PDC", "gene_reaction_rule": "SF4351"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Potassium transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["Kt2pp"]}, "metabolites": {"k_p": -1.0, "k_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "Kt2pp", "gene_reaction_rule": "(SF1296 and SF3321 and SF3925) or SF1251 or 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"SF3644 or (SF0260 and SF0259 and SF0258)"}, {"subsystem": "Oxidative Phosphorylation", "name": "L-Lactate dehydrogenase (menaquinone)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["L_DASH_LACD3"]}, "metabolites": {"mqn8_c": -1.0, "pyr_c": 1.0, "lac__L_c": -1.0, "mql8_c": 1.0}, "id": "L_LACD3", "gene_reaction_rule": "SF3644 or (SF0260 and SF0259 and SF0258)"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lactate reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["L_DASH_LACt2rpp"]}, "metabolites": {"lac__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "lac__L_p": -1.0}, "id": "L_LACt2rpp", "gene_reaction_rule": "SF3642 or SF3014"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-lactate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["L_DASH_LACtex"]}, "metabolites": {"lac__L_e": -1.0, "lac__L_p": 1.0}, "id": "L_LACtex", "gene_reaction_rule": "SF0926 or SF1823 or SF2299 or SF0289"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LA4NTpp"]}, "metabolites": {"acolipa_p": 1.0, "colipa_p": -1.0, "uLa4n_p": -1.0, "udcpp_p": 1.0}, "id": "LA4NTpp", "gene_reaction_rule": "SF2336"}, {"subsystem": "Alternate Carbon Metabolism", "name": "B-galactosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LACZpp"]}, "metabolites": {"gal_p": 1.0, "h2o_p": -1.0, "lcts_p": -1.0, "glc__D_p": 1.0}, "id": "LACZpp", "gene_reaction_rule": "SF2217"}, {"subsystem": "Murein Recycling", "name": "L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LADGMDH"]}, "metabolites": {"LalaDglu_c": 1.0, "h2o_c": -1.0, "LalaDgluMdap_c": -1.0, "26dap__M_c": 1.0}, "id": "LADGMDH", "gene_reaction_rule": "SF1332"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-alanyl-D-glutamate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LALADGLUtex"]}, "metabolites": {"LalaDglu_p": 1.0, "LalaDglu_e": -1.0}, "id": "LALADGLUtex", "gene_reaction_rule": "SF2299 or SF1823 or SF0289 or SF0926"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanyl-D-glutamate transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALADGLUtpp"]}, "metabolites": {"LalaDglu_p": -1.0, "LalaDglu_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LALADGLUtpp", "gene_reaction_rule": "SF1659 or dtpB or SF0588"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-alanyl-L-glutamate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LALALGLUtex"]}, "metabolites": {"LalaLglu_p": 1.0, "LalaLglu_e": -1.0}, "id": "LALALGLUtex", "gene_reaction_rule": "SF2299 or SF1823 or SF0289 or SF0926"}, {"subsystem": "Transport, Inner Membrane", "name": "L-alanyl-L-glutamate transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALALGLUtpp"]}, "metabolites": {"LalaLglu_p": -1.0, "LalaLglu_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LALALGLUtpp", "gene_reaction_rule": "SF1659 or dtpB or SF0588"}, {"subsystem": "Methylglyoxal Metabolism", "name": "L-Lactaldehyde:NADP+ 1-oxidoreductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALDO3"]}, "metabolites": {"nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "lald__L_c": 1.0, "mthgxl_c": -1.0}, "id": "LALDO3", "gene_reaction_rule": ""}, {"subsystem": "Murein Recycling", "name": "L-alanyl-gamma-L-glutamate peptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LALGP"]}, "metabolites": {"ala__L_c": 1.0, "LalaLglu_c": -1.0, "glu__L_c": 1.0, "h2o_c": -1.0}, "id": "LALGP", "gene_reaction_rule": "SF0285"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Lactaldehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LCADi"]}, "metabolites": {"h2o_c": -1.0, "lald__L_c": -1.0, "lac__L_c": 1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "LCADi", "gene_reaction_rule": "SF1797"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Lacaldehyde reductase (R-propane-1,2-diol forming)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCARR"]}, "metabolites": {"lald__D_c": -1.0, "nadh_c": -1.0, "12ppd__R_c": 1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "LCARR", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Lacaldehyde reductase (S-propane-1,2-diol forming)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCARS"]}, "metabolites": {"nad_c": 1.0, "nadh_c": -1.0, "12ppd__S_c": 1.0, "h_c": -1.0, "lald__L_c": -1.0}, "id": "LCARS", "gene_reaction_rule": "SF2813"}, {"subsystem": "Transport, Inner Membrane", "name": "Lactose transport via proton aniport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LCTSt3ipp"]}, "metabolites": {"lcts_c": -1.0, "lcts_p": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LCTSt3ipp", "gene_reaction_rule": "SF2255 or SF0065 or SF1566"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Lactose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCTStex"]}, "metabolites": {"lcts_p": 1.0, "lcts_e": -1.0}, "id": "LCTStex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Pyruvate Metabolism", "name": "D-lactate dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LDH_D"]}, "metabolites": {"pyr_c": 1.0, "nadh_c": 1.0, "lac__D_c": -1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "LDH_D", "gene_reaction_rule": "SF2218 or SF1814"}, {"subsystem": "Oxidative Phosphorylation", "name": "D-lactate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LDH_D2"]}, "metabolites": {"q8h2_c": 1.0, "pyr_c": 1.0, "lac__D_c": -1.0, "q8_c": -1.0}, "id": "LDH_D2", "gene_reaction_rule": "SF2218"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Leucine transaminase (irreversible)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LEUTAi"]}, "metabolites": {"akg_c": 1.0, "leu__L_c": 1.0, "4mop_c": -1.0, "glu__L_c": -1.0}, "id": "LEUTAi", "gene_reaction_rule": "SF3845 or SF4151"}, {"subsystem": "tRNA Charging", "name": "Leucyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LEUTRS"]}, "metabolites": {"leutrna_c": 1.0, "leu__L_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "trnaleu_c": -1.0}, "id": "LEUTRS", "gene_reaction_rule": "SF0639"}, {"subsystem": "Transport, Inner Membrane", "name": "L-leucine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LEUabcpp"]}, "metabolites": {"leu__L_c": 1.0, "atp_c": -1.0, "h2o_c": -1.0, "leu__L_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "LEUabcpp", "gene_reaction_rule": "(SF3472 and SF3473 and SF3475 and SF3478 and SF3474) or (SF3472 and SF3473 and SF3475 and SF3476 and SF3474)"}, {"subsystem": "Transport, Inner Membrane", "name": "L-leucine reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LEUt2rpp"]}, "metabolites": {"leu__L_p": -1.0, "leu__L_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LEUt2rpp", "gene_reaction_rule": "SF0338"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-leucine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LEUtex"]}, "metabolites": {"leu__L_p": 1.0, "leu__L_e": -1.0}, "id": "LEUtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Lactoylglutathione lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LGTHL"]}, "metabolites": {"gthrd_c": -1.0, "lgt__S_c": 1.0, "mthgxl_c": -1.0}, "id": "LGTHL", "gene_reaction_rule": "SF1678"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Lipid (cold) A transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPACabcpp"]}, "metabolites": {"h2o_c": -1.0, "lipa_cold_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "lipa_cold_p": 1.0, "pi_c": 1.0}, "id": "LIPACabcpp", "gene_reaction_rule": "SF0910"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Core oligosaccharide lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPAHT2ex"]}, "metabolites": {"hdca_e": -1.0, "h_e": -1.0, "h2o_e": 1.0, "hacolipa_e": 1.0, "colipa_e": -1.0}, "id": "LIPAHT2ex", "gene_reaction_rule": "SF0658"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPAHTex"]}, "metabolites": {"lipa_e": -1.0, "hdca_e": -1.0, "h_e": -1.0, "h2o_e": 1.0, "halipa_e": 1.0}, "id": "LIPAHTex", "gene_reaction_rule": "SF0658"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Lipid A transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPAabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "lipa_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "lipa_c": -1.0}, "id": "LIPAabcpp", "gene_reaction_rule": "SF0910"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Lipid A transport via ABC system (periplasm to extracellular)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPAabctex"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "lipa_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "lipa_e": 1.0, "pi_c": 1.0}, "id": "LIPAabctex", "gene_reaction_rule": "SF3240 and SF3241 and SF3239 and SF4228 and SF4227"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Lipoyl(octanoyl) transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPOCT"]}, "metabolites": {"octapb_c": 1.0, "ocACP_c": -1.0, "h_c": -1.0, "ACP_c": 1.0}, "id": "LIPOCT", "gene_reaction_rule": "SF0651"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Lipoate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPOS"]}, "metabolites": {"nad_c": -1.0, "fe2_c": 2.0, "dad_5_c": 2.0, "2fe2s_c": 1.0, "4fe4s_c": -1.0, "h_c": -1.0, "met__L_c": 2.0, "amet_c": -2.0, "nadh_c": 1.0, "lipopb_c": 1.0, "octapb_c": -1.0}, "id": "LIPOS", "gene_reaction_rule": "SF0653"}, {"subsystem": "Transport, Inner Membrane", "name": "Lipoate transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LIPOt2pp"]}, "metabolites": {"lipoate_p": -1.0, "h_c": 1.0, "h_p": -1.0, "lipoate_c": 1.0}, "id": "LIPOt2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Lipoate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LIPOtex"]}, "metabolites": {"lipoate_e": -1.0, "lipoate_p": 1.0}, "id": "LIPOtex", "gene_reaction_rule": "SF1823 or SF2299 or SF0926 or SF0289"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Lipid A disaccaride synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPADSS"]}, "metabolites": {"udp_c": 1.0, "u23ga_c": -1.0, "lipidAds_c": 1.0, "h_c": 1.0, "lipidX_c": -1.0}, "id": "LPADSS", "gene_reaction_rule": "SF0172"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2A120"]}, "metabolites": {"ddca_c": 1.0, "glyc3p_c": 1.0, "h2o_c": -1.0, "2ddecg3p_c": -1.0, "h_c": 2.0}, "id": "LPLIPAL2A120", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2A140"]}, "metabolites": {"glyc3p_c": 1.0, "h2o_c": -1.0, "2tdecg3p_c": -1.0, "h_c": 2.0, "ttdca_c": 1.0}, "id": "LPLIPAL2A140", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2A141"]}, "metabolites": {"h2o_c": -1.0, "glyc3p_c": 1.0, "h_c": 2.0, "2tdec7eg3p_c": -1.0, "ttdcea_c": 1.0}, "id": "LPLIPAL2A141", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2A160"]}, "metabolites": {"2hdecg3p_c": -1.0, "glyc3p_c": 1.0, "hdca_c": 1.0, "h_c": 2.0, "h2o_c": -1.0}, "id": "LPLIPAL2A160", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2A161"]}, "metabolites": {"hdcea_c": 1.0, "2hdec9eg3p_c": -1.0, "glyc3p_c": 1.0, "h_c": 2.0, "h2o_c": -1.0}, "id": "LPLIPAL2A161", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2A180"]}, "metabolites": {"glyc3p_c": 1.0, "2odecg3p_c": -1.0, "h_c": 2.0, "h2o_c": -1.0, "ocdca_c": 1.0}, "id": "LPLIPAL2A180", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2A181"]}, "metabolites": {"ocdcea_c": 1.0, "glyc3p_c": 1.0, "h_c": 2.0, "h2o_c": -1.0, "2odec11eg3p_c": -1.0}, "id": "LPLIPAL2A181", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase 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"lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATE180"]}, "metabolites": {"2agpe180_c": -1.0, "apg180_c": 1.0, "pg180_c": -1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2ATE180", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATE181"]}, "metabolites": {"apg181_c": 1.0, "2agpe181_c": -1.0, "pg181_c": -1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2ATE181", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG120"]}, "metabolites": {"g3pg_c": 1.0, "apg120_c": 1.0, "2agpg120_c": -1.0, "pg120_c": -1.0}, "id": "LPLIPAL2ATG120", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG140"]}, "metabolites": {"g3pg_c": 1.0, "2agpg140_c": -1.0, "apg140_c": 1.0, "pg140_c": -1.0}, "id": "LPLIPAL2ATG140", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG141"]}, "metabolites": {"pg141_c": -1.0, "g3pg_c": 1.0, "2agpg141_c": -1.0, "apg141_c": 1.0}, "id": "LPLIPAL2ATG141", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG160"]}, "metabolites": {"2agpg160_c": -1.0, "g3pg_c": 1.0, "pg160_c": -1.0, "apg160_c": 1.0}, "id": "LPLIPAL2ATG160", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG161"]}, "metabolites": {"g3pg_c": 1.0, "apg161_c": 1.0, "pg161_c": -1.0, "2agpg161_c": -1.0}, "id": "LPLIPAL2ATG161", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG180"]}, "metabolites": {"g3pg_c": 1.0, "pg180_c": -1.0, "2agpg180_c": -1.0, "apg180_c": 1.0}, "id": "LPLIPAL2ATG180", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2ATG181"]}, "metabolites": {"apg181_c": 1.0, "g3pg_c": 1.0, "pg181_c": -1.0, "2agpg181_c": -1.0}, "id": "LPLIPAL2ATG181", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E120"]}, "metabolites": {"ddca_c": 1.0, "h2o_c": -1.0, "2agpe120_c": -1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E120", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E140"]}, "metabolites": {"h2o_c": -1.0, "g3pe_c": 1.0, "2agpe140_c": -1.0, "h_c": 1.0, "ttdca_c": 1.0}, "id": "LPLIPAL2E140", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E141"]}, "metabolites": {"2agpe141_c": -1.0, "h2o_c": -1.0, "g3pe_c": 1.0, "h_c": 1.0, "ttdcea_c": 1.0}, "id": "LPLIPAL2E141", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E160"]}, "metabolites": {"h2o_c": -1.0, "hdca_c": 1.0, "h_c": 1.0, "2agpe160_c": -1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E160", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E161"]}, "metabolites": {"hdcea_c": 1.0, "h2o_c": -1.0, "2agpe161_c": -1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E161", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E180"]}, "metabolites": {"2agpe180_c": -1.0, "h2o_c": -1.0, "ocdca_c": 1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E180", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2E181"]}, "metabolites": {"ocdcea_c": 1.0, "h2o_c": -1.0, "2agpe181_c": -1.0, "h_c": 1.0, "g3pe_c": 1.0}, "id": "LPLIPAL2E181", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G120"]}, "metabolites": {"ddca_c": 1.0, "g3pg_c": 1.0, "h2o_c": -1.0, "2agpg120_c": -1.0, "h_c": 1.0}, "id": "LPLIPAL2G120", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G140"]}, "metabolites": {"g3pg_c": 1.0, "h2o_c": -1.0, "ttdca_c": 1.0, "2agpg140_c": -1.0, "h_c": 1.0}, "id": "LPLIPAL2G140", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G141"]}, "metabolites": {"g3pg_c": 1.0, "h2o_c": -1.0, "2agpg141_c": -1.0, "h_c": 1.0, "ttdcea_c": 1.0}, "id": "LPLIPAL2G141", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G160"]}, "metabolites": {"2agpg160_c": -1.0, "g3pg_c": 1.0, "h2o_c": -1.0, "hdca_c": 1.0, "h_c": 1.0}, "id": "LPLIPAL2G160", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G161"]}, "metabolites": {"hdcea_c": 1.0, "g3pg_c": 1.0, "h2o_c": -1.0, "h_c": 1.0, "2agpg161_c": -1.0}, "id": "LPLIPAL2G161", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G180"]}, "metabolites": {"g3pg_c": 1.0, "h2o_c": -1.0, "h_c": 1.0, "2agpg180_c": -1.0, "ocdca_c": 1.0}, "id": "LPLIPAL2G180", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LPLIPAL2G181"]}, "metabolites": {"ocdcea_c": 1.0, "h2o_c": -1.0, "g3pg_c": 1.0, "h_c": 1.0, "2agpg181_c": -1.0}, "id": "LPLIPAL2G181", "gene_reaction_rule": "SF3903"}, {"subsystem": "Glycine and Serine Metabolism", "name": "L-serine dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LSERDHr"]}, "metabolites": {"2amsa_c": 1.0, "ser__L_c": -1.0, "nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0}, "id": "LSERDHr", "gene_reaction_rule": "SF1556"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Lysine decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSDC"]}, "metabolites": {"15dap_c": 1.0, "co2_c": 1.0, "lys__L_c": -1.0, "h_c": -1.0}, "id": "LYSDC", "gene_reaction_rule": "SF0176"}, {"subsystem": "tRNA Charging", "name": "Lysyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSTRS"]}, "metabolites": {"trnalys_c": -1.0, "lys__L_c": -1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "lystrna_c": 1.0}, "id": "LYSTRS", "gene_reaction_rule": "SF2876"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lysine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSabcpp"]}, "metabolites": {"h2o_c": -1.0, "lys__L_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "lys__L_p": -1.0, "pi_c": 1.0}, "id": "LYSabcpp", "gene_reaction_rule": "SF2386 and SF2383 and SF2382 and SF2384"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lysine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSt2pp"]}, "metabolites": {"lys__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "lys__L_p": -1.0}, "id": "LYSt2pp", "gene_reaction_rule": "SF2241"}, {"subsystem": "Transport, Inner Membrane", "name": "L-lysine transport out via proton antiport (cytoplasm to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYSt3pp"]}, "metabolites": {"lys__L_c": -1.0, "h_c": 1.0, "h_p": -1.0, "lys__L_p": 1.0}, "id": "LYSt3pp", "gene_reaction_rule": "SF2908"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-lysine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LYStex"]}, "metabolites": {"lys__L_e": -1.0, "lys__L_p": 1.0}, "id": "LYStex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Lyxose isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYXI"]}, "metabolites": {"xylu__L_c": 1.0, "lyx__L_c": -1.0}, "id": "LYXI", "gene_reaction_rule": "SF3980"}, {"subsystem": "Transport, Inner Membrane", "name": "L-Lyxose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["LYXt2pp"]}, "metabolites": {"lyx__L_p": -1.0, "lyx__L_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "LYXt2pp", "gene_reaction_rule": "SF3984"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-Lyxose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LYXtex"]}, "metabolites": {"lyx__L_e": -1.0, "lyx__L_p": 1.0}, "id": "LYXtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Mannitol-1-phosphate 5-dehydrogenase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["M1PD"]}, "metabolites": {"h_c": 1.0, "nadh_c": 1.0, "mnl1p_c": -1.0, "nad_c": -1.0, "f6p_c": 1.0}, "id": "M1PD", "gene_reaction_rule": "SF3634"}, {"subsystem": "Membrane Lipid Metabolism", "name": "Malonyl-ACP decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MACPD"]}, "metabolites": {"acACP_c": 1.0, "co2_c": 1.0, "malACP_c": -1.0, "h_c": -1.0}, "id": "MACPD", "gene_reaction_rule": "SF2399"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Malonyl-CoA methyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALCOAMT"]}, "metabolites": {"amet_c": -1.0, "malcoame_c": 1.0, "malcoa_c": -1.0, "ahcys_c": 1.0}, "id": "MALCOAMT", "gene_reaction_rule": "SF0727"}, {"subsystem": "Transport, Inner Membrane", "name": "D-Malate transport via proton symport (2 H) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALDt2_2pp"]}, "metabolites": {"mal__D_p": -1.0, "mal__D_c": 1.0, "h_c": 2.0, "h_p": -2.0}, "id": "MALDt2_2pp", "gene_reaction_rule": "SF3560"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-Malate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MALDtex"]}, "metabolites": {"mal__D_p": 1.0, "mal__D_e": -1.0}, "id": "MALDtex", "gene_reaction_rule": "SF2299 or SF1823 or SF0289 or SF0926"}, {"subsystem": "Anaplerotic Reactions", "name": "Malate synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALS"]}, "metabolites": {"h2o_c": -1.0, "mal__L_c": 1.0, "glx_c": -1.0, "h_c": 1.0, "accoa_c": -1.0, "coa_c": 1.0}, "id": "MALS", "gene_reaction_rule": "SF3015"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Maltose O-acetyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MALTATr"]}, "metabolites": {"coa_c": 1.0, "malt_c": -1.0, "acmalt_c": 1.0, "accoa_c": -1.0}, "id": "MALTATr", "gene_reaction_rule": "maa"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltohexaose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTHXabcpp"]}, "metabolites": {"h2o_c": -1.0, "malthx_c": 1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "malthx_p": -1.0, "pi_c": 1.0}, "id": "MALTHXabcpp", "gene_reaction_rule": "SF4171 and SF4172 and SF4173 and SF4170"}, {"subsystem": "Transport, Outer Membrane", "name": "Maltohexaose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTHXtexi"]}, "metabolites": {"malthx_e": -1.0, "malthx_p": 1.0}, "id": "MALTHXtexi", "gene_reaction_rule": "SF4169"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltopentaose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTPTabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "maltpt_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "maltpt_c": 1.0, "pi_c": 1.0}, "id": "MALTPTabcpp", "gene_reaction_rule": "SF4171 and SF4172 and SF4173 and SF4170"}, {"subsystem": "Transport, Outer Membrane", "name": "MaltopentaoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTPTtexi"]}, "metabolites": {"maltpt_p": 1.0, "maltpt_e": -1.0}, "id": "MALTPTtexi", "gene_reaction_rule": "SF4169"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltotriose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTRabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "malttr_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "malttr_c": 1.0}, "id": "MALTTRabcpp", "gene_reaction_rule": "SF4171 and SF4172 and SF4173 and SF4170"}, {"subsystem": "Transport, Outer Membrane", "name": "Maltotriose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTRtexi"]}, "metabolites": {"malttr_e": -1.0, "malttr_p": 1.0}, "id": "MALTTRtexi", "gene_reaction_rule": "SF4169"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltotetraose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTTRabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "maltttr_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "maltttr_p": -1.0}, "id": "MALTTTRabcpp", "gene_reaction_rule": "SF4171 and SF4172 and SF4173 and SF4170"}, {"subsystem": "Transport, Outer Membrane", "name": "MaltotetraoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALTTTRtexi"]}, "metabolites": {"maltttr_e": -1.0, "maltttr_p": 1.0}, "id": "MALTTTRtexi", "gene_reaction_rule": "SF4169"}, {"subsystem": "Transport, Inner Membrane", "name": "Maltose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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{"subsystem": "Transport, Outer Membrane Porin", "name": "Magnesium (Mg+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MG2tex"]}, "metabolites": {"mg2_e": -1.0, "mg2_p": 1.0}, "id": "MG2tex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Magnesium (+2) transport in via diffusion", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MG2tpp"]}, "metabolites": {"mg2_c": 1.0, "mg2_p": -1.0}, "id": "MG2tpp", "gene_reaction_rule": "SF3894"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Magnesium (Mg+2) ABC transporter (ubtake, periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MG2uabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "mg2_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "mg2_c": 1.0}, "id": "MG2uabcpp", "gene_reaction_rule": "SF4248"}, {"subsystem": "Methylglyoxal Metabolism", "name": "Methylglyoxal synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MGSA"]}, "metabolites": {"dhap_c": -1.0, "pi_c": 1.0, "mthgxl_c": 1.0}, "id": "MGSA", "gene_reaction_rule": "SF0965"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Myo-inositol 1-phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MI1PP"]}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "inost_c": 1.0, "mi1p__D_c": -1.0}, "id": "MI1PP", "gene_reaction_rule": "SF2580"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-methylisocitrate dehydratase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MICITDr"]}, "metabolites": {"h2o_c": -1.0, "2mcacn_c": -1.0, "micit_c": 1.0}, "id": "MICITDr", "gene_reaction_rule": "SF0115"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Minocycline transport via diffusion 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(periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP1App"]}, "metabolites": {"murein5px4p_p": -1.0, "murein3px4p_p": 1.0, "alaala_p": 1.0, "h2o_p": -1.0}, "id": "MLDCP1App", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein4p4p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP1Bpp"]}, "metabolites": {"h2o_p": -1.0, "ala__D_p": 1.0, "murein4p3p_p": 1.0, "murein4p4p_p": -1.0}, "id": "MLDCP1Bpp", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein5p5p) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MLDCP2App"]}, "metabolites": {"h2o_p": -1.0, "murein5p5p_p": -1.0, "alaala_p": 1.0, "murein5p3p_p": 1.0}, "id": "MLDCP2App", "gene_reaction_rule": ""}, {"subsystem": "Murein Biosynthesis", "name": "Murein L,D-carboxypeptidase (murein4p3p) 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Membrane", "name": "Methanesulfonate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MSO3abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "mso3_c": 1.0, "mso3_p": -1.0, "adp_c": 1.0, "pi_c": 1.0, "h_c": 1.0}, "id": "MSO3abcpp", "gene_reaction_rule": "SF0935 and SF0930 and ssuC"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Methanesulfonate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MSO3tex"]}, "metabolites": {"mso3_e": -1.0, "mso3_p": 1.0}, "id": "MSO3tex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Methylthioadenosine nucleosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MTAN"]}, "metabolites": {"5mta_c": -1.0, "h2o_c": -1.0, "ade_c": 1.0, "5mtr_c": 1.0}, "id": "MTAN", "gene_reaction_rule": "SF0151"}, {"subsystem": "Folate Metabolism", "name": "Methenyltetrahydrofolate cyclohydrolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MTHFC"]}, "metabolites": {"h2o_c": -1.0, "10fthf_c": 1.0, "h_c": 1.0, "methf_c": -1.0}, "id": "MTHFC", "gene_reaction_rule": "SF0460"}, {"subsystem": "Folate Metabolism", "name": "Methylenetetrahydrofolate dehydrogenase (NADP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["MTHFD"]}, "metabolites": {"nadp_c": -1.0, "nadph_c": 1.0, "methf_c": 1.0, "mlthf_c": -1.0}, "id": "MTHFD", "gene_reaction_rule": "SF0460"}, {"subsystem": "Folate Metabolism", "name": "5,10-methylenetetrahydrofolate reductase (NADH)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MTHFR2"]}, "metabolites": {"h_c": -2.0, "nadh_c": -1.0, "nad_c": 1.0, "mlthf_c": -1.0, "5mthf_c": 1.0}, "id": "MTHFR2", "gene_reaction_rule": "SF4019"}, {"subsystem": "Methionine Metabolism", "name": "(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MTHTHFSs"]}, "metabolites": {"h2o_c": -1.0, "mdhdhf_c": -1.0, "mththf_c": 1.0}, "id": "MTHTHFSs", "gene_reaction_rule": "s0001"}, {"subsystem": "Glycine and Serine Metabolism", "name": "N-methyltryptophan oxidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MTRPOX"]}, "metabolites": {"o2_c": -1.0, "h2o_c": -1.0, "Nmtrp_c": -1.0, "fald_c": 1.0, "h2o2_c": 1.0, "trp__L_c": 1.0}, "id": "MTRPOX", "gene_reaction_rule": "SF1066"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Nitrious oxide transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["N2Otex"]}, "metabolites": {"n2o_p": 1.0, "n2o_e": -1.0}, "id": "N2Otex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Nitrious oxide transport (diffusion)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["N2Otpp"]}, "metabolites": {"n2o_c": 1.0, "n2o_p": -1.0}, "id": "N2Otpp", "gene_reaction_rule": "s0001"}, {"subsystem": "Arginine and Proline Metabolism", "name": "N-acetylornithine deacetylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NACODA"]}, "metabolites": {"glu5sa_c": 1.0, "h2o_c": -1.0, "ac_c": 1.0, "acg5sa_c": -1.0}, "id": "NACODA", "gene_reaction_rule": "SF4034"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Nicotinic acid transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NACtex"]}, "metabolites": {"nac_e": -1.0, "nac_p": 1.0}, "id": "NACtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Nicotinic acid uptake (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NACtpp"]}, "metabolites": {"nac_c": 1.0, "nac_p": -1.0}, "id": "NACtpp", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NAD diphosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADDP"]}, "metabolites": {"h2o_c": -1.0, "nmn_c": 1.0, "amp_c": 1.0, "nad_c": -1.0, "h_c": 2.0}, "id": "NADDP", "gene_reaction_rule": "SF4068 or SF2466"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADH dehydrogenase (menaquinone-8 & 0 protons)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH10"]}, "metabolites": {"nad_c": 1.0, "nadh_c": -1.0, "mqn8_c": -1.0, "h_c": -1.0, "mql8_c": 1.0}, "id": "NADH10", "gene_reaction_rule": "SF1113"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADH dehydrogenase (ubiquinone-8 & 3 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH16pp"]}, "metabolites": {"h_p": 3.0, "q8h2_c": 1.0, "h_c": -4.0, "nad_c": 1.0, "nadh_c": -1.0, "q8_c": -1.0}, "id": "NADH16pp", "gene_reaction_rule": "SF2352 and SF2353 and SF2354 and SF2355 and SF2356 and SF2357 and SF2358 and SF2359 and SF2360 and SF2361 and SF2362 and SF2363 and SF2364"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH17pp"]}, "metabolites": {"mqn8_c": -1.0, "h_p": 3.0, "h_c": -4.0, "nad_c": 1.0, "nadh_c": -1.0, "mql8_c": 1.0}, "id": "NADH17pp", "gene_reaction_rule": "SF2352 and SF2353 and SF2354 and SF2355 and SF2356 and SF2357 and SF2358 and SF2359 and SF2360 and SF2361 and SF2362 and SF2363 and SF2364"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH18pp"]}, "metabolites": {"2dmmq8_c": -1.0, "h_p": 3.0, "2dmmql8_c": 1.0, "h_c": -4.0, "nad_c": 1.0, "nadh_c": -1.0}, "id": "NADH18pp", "gene_reaction_rule": "SF2352 and SF2353 and SF2354 and SF2355 and SF2356 and SF2357 and SF2358 and SF2359 and SF2360 and SF2361 and SF2362 and SF2363 and SF2364"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADH dehydrogenase (ubiquinone-8 )", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH5"]}, "metabolites": {"q8h2_c": 1.0, "nadh_c": -1.0, "h_c": -1.0, "nad_c": 1.0, "q8_c": -1.0}, "id": "NADH5", "gene_reaction_rule": "SF1113"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADH dehydrogenase (demethylmenaquinone-8 & 0 protons)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADH9"]}, "metabolites": {"nadh_c": -1.0, "2dmmql8_c": 1.0, "2dmmq8_c": -1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "NADH9", "gene_reaction_rule": "SF1113"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NAD kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADK"]}, "metabolites": {"adp_c": 1.0, "nadp_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "atp_c": -1.0}, "id": "NADK", "gene_reaction_rule": "SF2674"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NAD nucleosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADN"]}, "metabolites": {"h_c": 1.0, "h2o_c": -1.0, "adprib_c": 1.0, "nad_c": -1.0, "ncam_c": 1.0}, "id": "NADN", "gene_reaction_rule": ""}, {"subsystem": "Oxidative Phosphorylation", "name": "NADPH Quinone Reductase (Ubiquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADPHQR2"]}, "metabolites": {"q8h2_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0, "q8_c": -1.0}, "id": "NADPHQR2", "gene_reaction_rule": "SF3068"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADPH Quinone Reductase (Menaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADPHQR3"]}, "metabolites": {"nadph_c": -1.0, "nadp_c": 1.0, "mqn8_c": -1.0, "h_c": -1.0, "mql8_c": 1.0}, "id": "NADPHQR3", "gene_reaction_rule": "SF3068"}, {"subsystem": "Oxidative Phosphorylation", "name": "NADPH Quinone Reductase (2-Demethylmenaquinone-8)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADPHQR4"]}, "metabolites": {"nadp_c": 1.0, "nadph_c": -1.0, "2dmmq8_c": -1.0, "2dmmql8_c": 1.0, "h_c": -1.0}, "id": "NADPHQR4", "gene_reaction_rule": "SF3068"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NADP phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NADPPPS"]}, "metabolites": {"h2o_c": -1.0, "nadp_c": -1.0, "pi_c": 1.0, "nad_c": 1.0}, "id": "NADPPPS", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "NAD synthase (nh3)", "upper_bound": 1000.0, 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"Sodium proton antiporter (H:NA is 1.5) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NAt3_1p5pp"]}, "metabolites": {"na1_p": 2.0, "na1_c": -2.0, "h_c": 3.0, "h_p": -3.0}, "id": "NAt3_1p5pp", "gene_reaction_rule": "SF1175"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Sodium proton antiporter (H:NA is 2) (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NAt3_2pp"]}, "metabolites": {"na1_p": 1.0, "na1_c": -1.0, "h_c": 2.0, "h_p": -2.0}, "id": "NAt3_2pp", "gene_reaction_rule": "SF0016"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Sodium transport out via proton antiport (cytoplasm to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["NAt3pp"]}, "metabolites": {"na1_p": 1.0, "na1_c": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "NAt3pp", "gene_reaction_rule": "SF0795 or SF1219"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Sodium transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NAtex"]}, "metabolites": {"na1_p": 1.0, "na1_e": -1.0}, "id": "NAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:GDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK1"]}, "metabolites": {"gdp_c": -1.0, "gtp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "NDPK1", "gene_reaction_rule": "SF0419 or SF2564"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:UDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK2"]}, "metabolites": {"udp_c": -1.0, "utp_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "NDPK2", "gene_reaction_rule": "SF0419 or SF2564"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:CDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK3"]}, "metabolites": {"cdp_c": -1.0, "ctp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "NDPK3", "gene_reaction_rule": "SF2564 or SF0419"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:dTDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK4"]}, "metabolites": {"dtdp_c": -1.0, "dttp_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "NDPK4", "gene_reaction_rule": "SF0419 or SF2564"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:dGDP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["NDPK5"]}, "metabolites": {"dgdp_c": -1.0, "dgtp_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "NDPK5", "gene_reaction_rule": "SF0419 or SF2564"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Nucleoside-diphosphate kinase (ATP:dUDP)", "upper_bound": 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"Phosphatidylglycerol synthase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PGSA180"]}, "metabolites": {"h_c": 1.0, "cdpdodecg_c": -1.0, "pgp180_c": 1.0, "glyc3p_c": -1.0, "cmp_c": 1.0}, "id": "PGSA180", "gene_reaction_rule": "SF1955"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylglycerol synthase (n-C18:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PGSA181"]}, "metabolites": {"h_c": 1.0, "glyc3p_c": -1.0, "pgp181_c": 1.0, "cdpdodec11eg_c": -1.0, "cmp_c": 1.0}, "id": "PGSA181", "gene_reaction_rule": "SF1955"}, {"subsystem": "Transport, Inner Membrane", "name": "Protoheme transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PHEMEabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "pheme_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "pheme_p": 1.0}, "id": "PHEMEabcpp", "gene_reaction_rule": "SF2285 and SF2284 and 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{"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Phosphopantothenoylcysteine decarboxylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPCDC"]}, "metabolites": {"pan4p_c": 1.0, "co2_c": 1.0, "4ppcys_c": -1.0, "h_c": -1.0}, "id": "PPCDC", "gene_reaction_rule": "SF3678"}, {"subsystem": "Anaplerotic Reactions", "name": "Phosphoenolpyruvate carboxykinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPCK"]}, "metabolites": {"pep_c": 1.0, "co2_c": 1.0, "oaa_c": -1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "PPCK", "gene_reaction_rule": "SF3422"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Propanoyl-CoA: succinate CoA-transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPCSCT"]}, "metabolites": {"succ_c": -1.0, "succoa_c": 1.0, "ppa_c": 1.0, "ppcoa_c": -1.0}, "id": "PPCSCT", "gene_reaction_rule": "scpC"}, {"subsystem": "Cofactor and Prosthetic Group 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"gene_reaction_rule": "SF2088"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylaminoimidazolesuccinocarboxamide synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PRASCSi", "PRASCS"]}, "metabolites": {"atp_c": -1.0, "5aizc_c": -1.0, "asp__L_c": -1.0, "25aics_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "PRASCSi_copy1", "gene_reaction_rule": "SF2519"}, {"subsystem": "Histidine Metabolism", "name": "Phosphoribosyl-ATP pyrophosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PRATPP"]}, "metabolites": {"ppi_c": 1.0, "prbamp_c": 1.0, "h_c": 1.0, "h2o_c": -1.0, "prbatp_c": -1.0}, "id": "PRATPP", "gene_reaction_rule": "SF2088"}, {"subsystem": "Purine and Pyrimidine Biosynthesis", "name": "Phosphoribosylformylglycinamidine synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PRFGS"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "glu__L_c": 1.0, 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Membrane", "name": "Psicoselysine transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PSCLYSt2pp"]}, "metabolites": {"psclys_c": 1.0, "h_c": 1.0, "h_p": -1.0, "psclys_p": -1.0}, "id": "PSCLYSt2pp", "gene_reaction_rule": "frlA"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Psicoselysine transporter via diffusion (extracellular)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PSCLYStex"]}, "metabolites": {"psclys_e": -1.0, "psclys_p": 1.0}, "id": "PSCLYStex", "gene_reaction_rule": "SF2299 or SF1823 or SF0289 or SF0926"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "3-phosphoshikimate 1-carboxyvinyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PSCVT"]}, "metabolites": {"pep_c": -1.0, "pi_c": 1.0, "skm5p_c": -1.0, "3psme_c": 1.0}, "id": "PSCVT", "gene_reaction_rule": "SF0903"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylserine decarboxylase (n-C12:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PSD120"]}, "metabolites": {"pe120_c": 1.0, "ps120_c": -1.0, "co2_c": 1.0, "h_c": -1.0}, "id": "PSD120", "gene_reaction_rule": "SF4318"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylserine decarboxylase (n-C14:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PSD140"]}, "metabolites": {"co2_c": 1.0, "ps140_c": -1.0, "h_c": -1.0, "pe140_c": 1.0}, "id": "PSD140", "gene_reaction_rule": "SF4318"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylserine decarboxylase (n-C14:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PSD141"]}, "metabolites": {"co2_c": 1.0, "ps141_c": -1.0, "h_c": -1.0, "pe141_c": 1.0}, "id": "PSD141", "gene_reaction_rule": "SF4318"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylserine decarboxylase (n-C16:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PSD160"]}, "metabolites": {"ps160_c": -1.0, "co2_c": 1.0, "pe160_c": 1.0, "h_c": -1.0}, "id": "PSD160", "gene_reaction_rule": "SF4318"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylserine decarboxylase (n-C16:1)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PSD161"]}, "metabolites": {"co2_c": 1.0, "pe161_c": 1.0, "h_c": -1.0, "ps161_c": -1.0}, "id": "PSD161", "gene_reaction_rule": "SF4318"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylserine decarboxylase (n-C18:0)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PSD180"]}, "metabolites": {"ps180_c": -1.0, "co2_c": 1.0, "h_c": -1.0, "pe180_c": 1.0}, "id": "PSD180", "gene_reaction_rule": "SF4318"}, {"subsystem": "Glycerophospholipid Metabolism", "name": "Phosphatidylserine decarboxylase (n-C18:1)", 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{"subsystem": "Transport, Inner Membrane", "name": "Pyridoxine import", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PYDXNtpp"]}, "metabolites": {"pydxn_c": 1.0, "pydxn_p": -1.0}, "id": "PYDXNtpp", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Pyridoxal 5-phosphate phosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PYDXPP"]}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "pydx5p_c": -1.0, "pydx_c": 1.0}, "id": "PYDXPP", "gene_reaction_rule": "SF0391 or SF3904 or SF0538"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Pyridoxal transport via diffusion (extracellular)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PYDXtex"]}, "metabolites": {"pydx_e": -1.0, "pydx_p": 1.0}, "id": "PYDXtex", "gene_reaction_rule": "SF2299 or SF0926 or SF1823 or SF0289"}, {"subsystem": "Transport, Inner Membrane", "name": "Pyridoxal import", 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"upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TDPADGAT"]}, "metabolites": {"dtdp4addg_c": -1.0, "dtdp4aaddg_c": 1.0, "coa_c": 1.0, "h_c": 1.0, "accoa_c": -1.0}, "id": "TDPADGAT", "gene_reaction_rule": "SF3864"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "DTDP-4-amino-4,6-dideoxy-D-glucose transaminase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TDPAGTA"]}, "metabolites": {"akg_c": 1.0, "dtdp4addg_c": 1.0, "glu__L_c": -1.0, "dtdp4d6dg_c": -1.0}, "id": "TDPAGTA", "gene_reaction_rule": "SF3865"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "DTDP-4-dehydrorhamnose reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TDPDRR"]}, "metabolites": {"dtdprmn_c": 1.0, "dtdp4d6dm_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0}, "id": "TDPDRR", "gene_reaction_rule": "SF2103"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "DTDPglucose 4,6-dehydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TDPGDH"]}, "metabolites": {"dtdpglu_c": -1.0, "h2o_c": 1.0, "dtdp4d6dg_c": 1.0}, "id": "TDPGDH", "gene_reaction_rule": "SF3862 or SF2104"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Tetraacyldisaccharide 4'kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TDSK"]}, "metabolites": {"lipidAds_c": -1.0, "atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "lipidA_c": 1.0}, "id": "TDSK", "gene_reaction_rule": "SF0911"}, {"subsystem": "Transport, Inner Membrane", "name": "Thiol:disulfide reductase (DsbC)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TDSR1"]}, "metabolites": {"dsbcrd_p": 1.0, "dsbdox_c": 1.0, "dsbdrd_c": -1.0, "dsbcox_p": -1.0}, "id": "TDSR1", "gene_reaction_rule": "SF2879 and SF4290"}, {"subsystem": "Transport, Inner Membrane", "name": "Thiol:disulfide reductase (DsbG)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TDSR2"]}, "metabolites": {"dsbdox_c": 1.0, "dsbgox_p": -1.0, "dsbgrd_p": 1.0, "dsbdrd_c": -1.0}, "id": "TDSR2", "gene_reaction_rule": "SF4290 and SF0523"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Tagatose-bisphosphate aldolase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TGBPA"]}, "metabolites": {"dhap_c": 1.0, "g3p_c": 1.0, "tagdp__D_c": -1.0}, "id": "TGBPA", "gene_reaction_rule": "SF2157 and SF2158"}, {"subsystem": "Oxidative Phosphorylation", "name": "NAD(P) transhydrogenase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THD2pp"]}, "metabolites": {"nadp_c": -1.0, "nadph_c": 1.0, "h_p": -2.0, "h_c": 2.0, "nad_c": 1.0, "nadh_c": -1.0}, "id": "THD2pp", "gene_reaction_rule": "SF1623 and SF1624"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Tetrahydrodipicolinate succinylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THDPS"]}, "metabolites": {"thdp_c": -1.0, "coa_c": 1.0, "h2o_c": -1.0, "succoa_c": -1.0, "sl2a6o_c": 1.0}, "id": "THDPS", "gene_reaction_rule": "SF0156"}, {"subsystem": "Folate Metabolism", "name": "Tetrahydrofolate aminomethyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THFAT"]}, "metabolites": {"5fthf_c": 1.0, "h2o_c": -1.0, "methf_c": -1.0, "h_c": 1.0}, "id": "THFAT", "gene_reaction_rule": "SF2598"}, {"subsystem": "Unassigned", "name": "Hydrogen peroxide reductase (thioredoxin)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THIORDXi"]}, "metabolites": {"h2o2_c": -1.0, "trdox_c": 1.0, "trdrd_c": -1.0, "h2o_c": 2.0}, "id": "THIORDXi", "gene_reaction_rule": "(SF2523 and SF3854) or (SF2523 and SF2644) or SF1521"}, {"subsystem": "Transport, Inner Membrane", "name": "Thymidine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THMDt2pp"]}, "metabolites": {"thymd_p": -1.0, "h_c": 1.0, "h_p": -1.0, "thymd_c": 1.0}, "id": "THMDt2pp", "gene_reaction_rule": "SF2458 or SF2961"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Thymidine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["THMDtex"]}, "metabolites": {"thymd_e": -1.0, "thymd_p": 1.0}, "id": "THMDtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Thiamine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THMabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "thm_c": 1.0, "thm_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "THMabcpp", "gene_reaction_rule": "SF0063 and SF0062 and SF0061"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Thiamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["THMtex"]}, "metabolites": {"thm_p": 1.0, "thm_e": -1.0}, "id": "THMtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "L-allo-Threonine Aldolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRA2i"]}, "metabolites": {"acald_c": 1.0, "gly_c": 1.0, "athr__L_c": -1.0}, "id": "THRA2i", "gene_reaction_rule": "SF2598 or SF0825"}, {"subsystem": "Threonine and Lysine Metabolism", "name": "Threonine aldolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRAi"]}, "metabolites": {"acald_c": 1.0, "thr__L_c": -1.0, "gly_c": 1.0}, "id": "THRAi", "gene_reaction_rule": "SF2598 or SF0825"}, {"subsystem": "Glycine and Serine Metabolism", "name": "L-threonine dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRD"]}, "metabolites": {"thr__L_c": -1.0, "nadh_c": 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"id": "THRS", "gene_reaction_rule": "SF0004"}, {"subsystem": "tRNA Charging", "name": "Threonyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRTRS"]}, "metabolites": {"atp_c": -1.0, "thrtrna_c": 1.0, "ppi_c": 1.0, "amp_c": 1.0, "thr__L_c": -1.0, "trnathr_c": -1.0}, "id": "THRTRS", "gene_reaction_rule": "SF1512"}, {"subsystem": "Transport, Inner Membrane", "name": "L-threonine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "thr__L_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "thr__L_c": 1.0, "pi_c": 1.0}, "id": "THRabcpp", "gene_reaction_rule": "SF3472 and SF3473 and SF3475 and SF3478 and SF3474"}, {"subsystem": "Transport, Inner Membrane", "name": "L-threonine efflux transport via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRt2pp"]}, "metabolites": {"thr__L_p": 1.0, "thr__L_c": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "THRt2pp", "gene_reaction_rule": "SF0764 or SF3901"}, {"subsystem": "Transport, Inner Membrane", "name": "L-threonine reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["THRt2rpp"]}, "metabolites": {"thr__L_p": -1.0, "thr__L_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "THRt2rpp", "gene_reaction_rule": "SF3156"}, {"subsystem": "Transport, Inner Membrane", "name": "L-threonine  via sodium symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["THRt4pp"]}, "metabolites": {"na1_p": -1.0, "thr__L_p": -1.0, "thr__L_c": 1.0, "na1_c": 1.0}, "id": "THRt4pp", "gene_reaction_rule": "SF3129"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-threonine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["THRtex"]}, 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{"subsystem": "Transport, Outer Membrane Porin", "name": "Trehalose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TREtex"]}, "metabolites": {"tre_p": 1.0, "tre_e": -1.0}, "id": "TREtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophanase (L-tryptophan)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRPAS2"]}, "metabolites": {"h2o_c": -1.0, "pyr_c": 1.0, "indole_c": 1.0, "trp__L_c": -1.0, "nh4_c": 1.0}, "id": "TRPAS2", "gene_reaction_rule": "SF3754"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophan synthase (indoleglycerol phosphate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPS1"]}, "metabolites": {"h2o_c": 1.0, "ser__L_c": -1.0, "g3p_c": 1.0, "trp__L_c": 1.0, "3ig3p_c": -1.0}, "id": "TRPS1", "gene_reaction_rule": "SF1263 and SF1264"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophan synthase (indole)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPS2"]}, "metabolites": {"h2o_c": 1.0, "ser__L_c": -1.0, "indole_c": -1.0, "trp__L_c": 1.0}, "id": "TRPS2", "gene_reaction_rule": "SF1263 and SF1264"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tryptophan synthase (indoleglycerol phosphate)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPS3"]}, "metabolites": {"g3p_c": 1.0, "indole_c": 1.0, "3ig3p_c": -1.0}, "id": "TRPS3", "gene_reaction_rule": "SF1263 and SF1264"}, {"subsystem": "tRNA Charging", "name": "Tryptophanyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TRPTRS"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "trnatrp_c": -1.0, "amp_c": 1.0, "trptrna_c": 1.0, "trp__L_c": -1.0}, "id": "TRPTRS", "gene_reaction_rule": "SF3402"}, {"subsystem": "Transport, Inner Membrane", "name": "L-tryptophan reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRPt2rpp"]}, "metabolites": {"trp__L_c": 1.0, "h_c": 1.0, "h_p": -1.0, "trp__L_p": -1.0}, "id": "TRPt2rpp", "gene_reaction_rule": "SF3202 or SF3753 or SF1752 or SF0109"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-tryptophan transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRPtex"]}, "metabolites": {"trp__L_e": -1.0, "trp__L_p": 1.0}, "id": "TRPtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Tartronate semialdehyde reductase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TRSARr"]}, "metabolites": {"nadh_c": -1.0, "glyc__R_c": 1.0, "2h3oppan_c": -1.0, "nad_c": 1.0, "h_c": -1.0}, "id": "TRSARr", "gene_reaction_rule": "SF3162"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Thiosulfate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TSULtex"]}, "metabolites": {"tsul_e": -1.0, "tsul_p": 1.0}, "id": "TSULtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane", "name": "Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TTDCAtexi"]}, "metabolites": {"ttdca_e": -1.0, "ttdca_p": 1.0}, "id": "TTDCAtexi", "gene_reaction_rule": "SF2421"}, {"subsystem": "Transport, Outer Membrane", "name": "Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TTDCEAtexi"]}, "metabolites": {"ttdcea_e": -1.0, "ttdcea_p": 1.0}, "id": "TTDCEAtexi", "gene_reaction_rule": "SF2421"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Tetracycline transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TTRCYCtex"]}, "metabolites": {"ttrcyc_e": -1.0, "ttrcyc_p": 1.0}, "id": "TTRCYCtex", "gene_reaction_rule": "SF1823 or SF2299 or SF0926 or SF0289"}, {"subsystem": "Transport, Outer Membrane", "name": "Tetracycline transport via TolC system", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TTRCYCtpp"]}, "metabolites": {"ttrcyc_e": 1.0, "ttrcyc_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "TTRCYCtpp", "gene_reaction_rule": "SF0408 and SF2512 and SF3075"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Tungstate transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TUNGSabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "tungs_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "tungs_p": -1.0}, "id": "TUNGSabcpp", "gene_reaction_rule": "SF0541 and SF0540 and SF0539"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Tungstate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TUNGStex"]}, "metabolites": {"tungs_e": -1.0, "tungs_p": 1.0}, "id": "TUNGStex", "gene_reaction_rule": "SF2299 or SF1823 or SF0289 or SF0926"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Tyramine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TYMtex"]}, "metabolites": {"tym_e": -1.0, "tym_p": 1.0}, "id": "TYMtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Tyrosine lyase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TYRL"]}, "metabolites": {"dhgly_c": 1.0, "nadp_c": 1.0, "nadph_c": -1.0, "dad_5_c": 1.0, "tyr__L_c": -1.0, "h_c": 1.0, "met__L_c": 1.0, "amet_c": -1.0, "4crsol_c": 1.0}, "id": "TYRL", "gene_reaction_rule": "SF4063"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Phospho-L-tyrosine phosphatase (periplasmic)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TYRPpp"]}, "metabolites": {"tyrp_p": -1.0, "pi_p": 1.0, "tyr__L_p": 1.0, "h2o_p": -1.0}, "id": "TYRPpp", "gene_reaction_rule": "SF4149"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Phopho-L-tyrosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TYRPtex"]}, "metabolites": {"tyrp_p": 1.0, "tyrp_e": -1.0}, "id": "TYRPtex", "gene_reaction_rule": "SF2299 or SF0289 or SF0926 or SF1823"}, {"subsystem": "Tyrosine, Tryptophan, and Phenylalanine Metabolism", "name": "Tyrosine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TYRTA"]}, "metabolites": {"akg_c": -1.0, "34hpp_c": 1.0, "glu__L_c": 1.0, "tyr__L_c": -1.0}, "id": "TYRTA", "gene_reaction_rule": "SF4151 or SF0925"}, {"subsystem": "tRNA Charging", "name": "Tyrosyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["TYRTRS"]}, "metabolites": {"atp_c": -1.0, "ppi_c": 1.0, "tyrtrna_c": 1.0, "trnatyr_c": -1.0, "amp_c": 1.0, "tyr__L_c": -1.0}, "id": "TYRTRS", "gene_reaction_rule": "SF1662"}, {"subsystem": "Transport, Inner Membrane", "name": "L-tyrosine reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TYRt2rpp"]}, "metabolites": {"tyr__L_p": -1.0, "h_c": 1.0, "h_p": -1.0, "tyr__L_c": 1.0}, "id": "TYRt2rpp", "gene_reaction_rule": "SF1752 or SF1953 or 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"id": "U23GAAT", "gene_reaction_rule": "SF0169"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UAAGDS"]}, "metabolites": {"atp_c": -1.0, "26dap__M_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "uamag_c": -1.0, "ugmd_c": 1.0}, "id": "UAAGDS", "gene_reaction_rule": "SF0082"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDP-N-acetyl-D-galactosamine pyrophosphohydrolase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UACGALPpp"]}, "metabolites": {"h2o_p": -1.0, "ump_p": 1.0, "acgal1p_p": 1.0, "udpacgal_p": -1.0, "h_p": 2.0}, "id": "UACGALPpp", "gene_reaction_rule": "SF0425"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDP-N-acetyl-D-glucosamine pyrophosphohydrolase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UACGAMPpp"]}, "metabolites": {"h2o_p": -1.0, "ump_p": 1.0, "uacgam_p": -1.0, "acgam1p_p": 1.0, "h_p": 2.0}, "id": "UACGAMPpp", "gene_reaction_rule": "SF0425"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "UDP-N-acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UACGAMtex"]}, "metabolites": {"uacgam_p": 1.0, "uacgam_e": -1.0}, "id": "UACGAMtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetyl-D-mannosamine oxidoreductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UACMAMO"]}, "metabolites": {"h2o_c": -1.0, "uacmamu_c": 1.0, "uacmam_c": -1.0, "h_c": 3.0, "nad_c": -2.0, "nadh_c": 2.0}, "id": "UACMAMO", "gene_reaction_rule": "SF3861"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylglucosamine 2-epimerase", "upper_bound": 1000.0, 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"UDP-N-acetylmuramoyl-L-alanine synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UAMAS"]}, "metabolites": {"atp_c": -1.0, "uamr_c": -1.0, "ala__L_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "uama_c": 1.0}, "id": "UAMAS", "gene_reaction_rule": "SF0088"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylenolpyruvoylglucosamine reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UAPGR"]}, "metabolites": {"uamr_c": 1.0, "uaccg_c": -1.0, "nadp_c": 1.0, "nadph_c": -1.0, "h_c": -1.0}, "id": "UAPGR", "gene_reaction_rule": "SF4050"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "Undecaprenyl-diphosphatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UDCPDP"]}, "metabolites": {"udcpdp_c": -1.0, "h2o_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "udcpp_c": 1.0}, "id": "UDCPDP", "gene_reaction_rule": "SF0794 or SF1282 or SF3098"}, {"subsystem": "Cofactor and Prosthetic 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"name": "UDP-N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UDPACGALtex"]}, "metabolites": {"udpacgal_e": -1.0, "udpacgal_p": 1.0}, "id": "UDPACGALtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDPglucose 4-epimerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UDPG4E"]}, "metabolites": {"udpgal_c": 1.0, "udpg_c": -1.0}, "id": "UDPG4E", "gene_reaction_rule": "SF0545"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDPgalactose pyrophosphohydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UDPGALPpp"]}, "metabolites": {"h2o_p": -1.0, "ump_p": 1.0, "udpgal_p": -1.0, "h_p": 2.0, "gal1p_p": 1.0}, "id": "UDPGALPpp", "gene_reaction_rule": "SF0425"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "UDPgalactose 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{"subsystem": "Alternate Carbon Metabolism", "name": "UDPglucose pyrophosphohydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UDPGPpp"]}, "metabolites": {"h2o_p": -1.0, "ump_p": 1.0, "g1p_p": 1.0, "h_p": 2.0, "udpg_p": -1.0}, "id": "UDPGPpp", "gene_reaction_rule": "SF0425"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "UDPglucose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UDPGtex"]}, "metabolites": {"udpg_e": -1.0, "udpg_p": 1.0}, "id": "UDPGtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UDPKAAT"]}, "metabolites": {"akg_c": 1.0, "glu__L_c": -1.0, "udpLa4o_c": -1.0, "udpLa4n_c": 1.0}, "id": "UDPKAAT", "gene_reaction_rule": "SF2332"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDP-D-glucuronate pyrophosphohydrolase (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UGLCURPpp"]}, "metabolites": {"glcur1p_p": 1.0, "h2o_p": -1.0, "ump_p": 1.0, "udpglcur_p": -1.0, "h_p": 2.0}, "id": "UGLCURPpp", "gene_reaction_rule": "SF0425"}, {"subsystem": "Alternate Carbon Metabolism", "name": "UDPglucose--hexose-1-phosphate uridylyltransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UGLT"]}, "metabolites": {"udpgal_c": 1.0, "udpg_c": -1.0, "gal1p_c": -1.0, "g1p_c": 1.0}, "id": "UGLT", "gene_reaction_rule": "SF0546"}, {"subsystem": "Nitrogen Metabolism", "name": "Ureidoglycolate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UGLYCH"]}, "metabolites": {"urdglyc_c": -1.0, "h2o_c": -1.0, "glx_c": 1.0, "h_c": -2.0, "co2_c": 1.0, "nh4_c": 2.0}, "id": "UGLYCH", "gene_reaction_rule": "SF0444"}, {"subsystem": "Cell Envelope Biosynthesis", "name": "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UGMDDS"]}, "metabolites": {"atp_c": -1.0, "h_c": 1.0, "adp_c": 1.0, "ugmda_c": 1.0, "pi_c": 1.0, "alaala_c": -1.0, "ugmd_c": -1.0}, "id": "UGMDDS", "gene_reaction_rule": "SF0083"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "UDP-3-O-acetylglucosamine deacetylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UHGADA"]}, "metabolites": {"u3aga_c": -1.0, "u3hga_c": 1.0, "ac_c": 1.0, "h2o_c": -1.0}, "id": "UHGADA", "gene_reaction_rule": "SF0093"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "UDP-L-Ara4N formyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ULA4NFT"]}, "metabolites": {"udpLa4fn_c": 1.0, "thf_c": 1.0, "udpLa4n_c": -1.0, "h_c": 1.0, "10fthf_c": -1.0}, "id": "ULA4NFT", "gene_reaction_rule": "SF2334"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Transport (cytoplasm to periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ULA4Ntppi"]}, "metabolites": {"uLa4n_p": 1.0, "uLa4n_c": -1.0}, "id": "ULA4Ntppi", "gene_reaction_rule": "arnE and SF2337"}, {"subsystem": "Murein Recycling", "name": "UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UM3PL"]}, "metabolites": {"adp_c": 1.0, "atp_c": -1.0, "uamr_c": -1.0, "h_c": 1.0, "LalaDgluMdap_c": -1.0, "pi_c": 1.0, "ugmd_c": 1.0}, "id": "UM3PL", "gene_reaction_rule": "SF4257"}, {"subsystem": "Murein Recycling", "name": "UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UM4PCP"]}, "metabolites": {"um4p_c": -1.0, "ala__D_c": 1.0, "h2o_c": -1.0, "ugmd_c": 1.0}, "id": "UM4PCP", "gene_reaction_rule": "SF1182"}, {"subsystem": "Murein Recycling", "name": "UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UM4PL"]}, "metabolites": {"LalaDgluMdapDala_c": -1.0, "atp_c": -1.0, "uamr_c": -1.0, "um4p_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0}, "id": "UM4PL", "gene_reaction_rule": "SF4257"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "UMP kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UMPK"]}, "metabolites": {"ump_c": -1.0, "udp_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "UMPK", "gene_reaction_rule": "SF0906 or SF0161"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "UMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UMPtex"]}, "metabolites": {"ump_p": 1.0, "ump_e": -1.0}, "id": "UMPtex", "gene_reaction_rule": "SF0926 or SF1823 or SF2299 or SF0289"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Undecaprenyl phosphate-L-Ara4FN formylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UPLA4FNF"]}, "metabolites": {"h2o_c": -1.0, "for_c": 1.0, "uLa4fn_c": -1.0, "uLa4n_c": 1.0}, "id": "UPLA4FNF", "gene_reaction_rule": "SF2335"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "Undecaprenyl phosphate-L-Ara4FN transferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UPLA4FNT"]}, "metabolites": {"udpLa4fn_c": -1.0, "udp_c": 1.0, "uLa4fn_c": 1.0, "udcpp_c": -1.0}, "id": "UPLA4FNT", "gene_reaction_rule": "SF2333"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Uroporphyrinogen methyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UPP3MT"]}, "metabolites": {"amet_c": -2.0, "dscl_c": 1.0, "ahcys_c": 2.0, "h_c": 1.0, "uppg3_c": -1.0}, "id": "UPP3MT", "gene_reaction_rule": "SF3875 or SF3387"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Uroporphyrinogen-III synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UPP3S"]}, "metabolites": {"h2o_c": 1.0, "hmbil_c": -1.0, "uppg3_c": 1.0}, "id": "UPP3S", "gene_reaction_rule": "SF3876"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Uroporphyrinogen decarboxylase (uroporphyrinogen III)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UPPDC1"]}, "metabolites": {"co2_c": 4.0, "h_c": -4.0, "uppg3_c": -1.0, "cpppg3_c": 1.0}, "id": "UPPDC1", "gene_reaction_rule": "SF4069"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Uracil phosphoribosyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UPPRT"]}, "metabolites": {"ump_c": 1.0, "ppi_c": 1.0, "prpp_c": -1.0, "ura_c": -1.0}, "id": "UPPRT", "gene_reaction_rule": "SF2542"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Peroxyureidoacrylate hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URACPAH"]}, "metabolites": {"h2o_c": -1.0, "cbm_c": 1.0, "poaac_c": 1.0, "uracp_c": -1.0, "h_c": 1.0}, "id": "URACPAH", "gene_reaction_rule": "SF1014"}, {"subsystem": "Transport, Inner Membrane", "name": "Uracil transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URAt2pp", "URAt2rpp"]}, "metabolites": {"ura_c": 1.0, "ura_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "URAt2pp_copy1", "gene_reaction_rule": "SF2541"}, {"subsystem": "Transport, Inner Membrane", "name": "Uracil transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URAt2pp", "URAt2rpp"]}, "metabolites": {"ura_c": 1.0, "ura_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "URAt2pp_copy2", "gene_reaction_rule": "SF1009"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Uracil transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URAtex"]}, "metabolites": {"ura_p": 1.0, "ura_e": -1.0}, "id": "URAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Urea transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UREAtex"]}, "metabolites": {"urea_p": 1.0, "urea_e": -1.0}, "id": "UREAtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Urea transport via facilitate diffusion (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["UREAtpp"]}, "metabolites": {"urea_p": -1.0, "urea_c": 1.0}, "id": "UREAtpp", "gene_reaction_rule": "SF4005"}, {"subsystem": "Unassigned", "name": "Uricase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIC"]}, "metabolites": {"o2_c": -1.0, "h2o_c": -2.0, "urate_c": -1.0, "h2o2_c": 1.0, "co2_c": 1.0, "alltn_c": 1.0}, "id": "URIC", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "Uridine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIH"]}, "metabolites": {"uri_c": -1.0, "h2o_c": -1.0, "rib__D_c": 1.0, "ura_c": 1.0}, "id": "URIH", "gene_reaction_rule": "SF2247 or SF0630 or SF0027"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Uridine kinase (GTP:Uridine)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIK2"]}, "metabolites": {"ump_c": 1.0, "gtp_c": -1.0, "gdp_c": 1.0, "h_c": 1.0, "uri_c": -1.0}, "id": "URIK2", "gene_reaction_rule": "SF2130"}, {"subsystem": "Transport, Inner Membrane", "name": "Uridine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URIt2pp", "URIt2rpp"]}, "metabolites": {"uri_c": 1.0, "uri_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "URIt2pp_copy1", "gene_reaction_rule": "SF2458 or SF2961"}, {"subsystem": "Transport, Outer Membrane", "name": "Uridine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URItex"]}, "metabolites": {"uri_p": 1.0, "uri_e": -1.0}, "id": "URItex", "gene_reaction_rule": "SF0348"}, {"subsystem": "Lipopolysaccharide Biosynthesis / Recycling", "name": "UDP-sugar hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["USHD"]}, "metabolites": {"u23ga_c": -1.0, "h2o_c": -1.0, "h_c": 2.0, "lipidX_c": 1.0, "ump_c": 1.0}, "id": "USHD", "gene_reaction_rule": "SF0455"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Valine transaminase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VALTA"]}, "metabolites": {"akg_c": -1.0, "glu__L_c": 1.0, "val__L_c": -1.0, "3mob_c": 1.0}, "id": "VALTA", "gene_reaction_rule": "SF3845"}, {"subsystem": "tRNA Charging", "name": "Valyl-tRNA synthetase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["VALTRS"]}, "metabolites": {"valtrna_c": 1.0, "atp_c": -1.0, "ppi_c": 1.0, "amp_c": 1.0, "trnaval_c": -1.0, "val__L_c": -1.0}, "id": "VALTRS", "gene_reaction_rule": "SF4231"}, {"subsystem": "Transport, Inner Membrane", "name": "L-valine transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["VALabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "val__L_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "val__L_c": 1.0}, "id": "VALabcpp", "gene_reaction_rule": "SF3472 and SF3473 and SF3475 and SF3478 and SF3474"}, {"subsystem": "Transport, Inner Membrane", "name": "L-valine reversible transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VALt2rpp"]}, "metabolites": {"val__L_p": -1.0, "h_c": 1.0, "h_p": -1.0, "val__L_c": 1.0}, "id": "VALt2rpp", "gene_reaction_rule": "SF0338 or (SF2710 and SF2709)"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-valine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VALtex"]}, "metabolites": {"val__L_e": -1.0, "val__L_p": 1.0}, "id": "VALtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Valine, Leucine, and Isoleucine Metabolism", "name": "Valine-pyruvate aminotransferase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["VPAMTr", "VPAMT"]}, "metabolites": {"pyr_c": 1.0, "3mob_c": -1.0, "ala__L_c": -1.0, "val__L_c": 1.0}, "id": "VPAMTr_copy1", "gene_reaction_rule": "SF3616"}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Tungsten pterin cofactor synthase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["WCOS"]}, "metabolites": {"cu2_c": 1.0, "h2o_c": 1.0, "tungs_c": -1.0, "amp_c": 1.0, "mptamp_c": -1.0, "wco_c": 1.0, "h_c": -2.0}, "id": "WCOS", "gene_reaction_rule": "SF0777"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-xylulose 5-phosphate 3-epimerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["X5PL3E"]}, "metabolites": {"xu5p__L_c": -1.0, "ru5p__L_c": 1.0}, "id": "X5PL3E", "gene_reaction_rule": "SF4352"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Xanthine dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XAND"]}, "metabolites": {"h2o_c": -1.0, "xan_c": -1.0, "urate_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "XAND", "gene_reaction_rule": "SF2868 and SF2869 and SF2870"}, {"subsystem": "Transport, Inner Membrane", "name": "Xanthine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XANt2pp"]}, "metabolites": {"xan_c": 1.0, "h_c": 1.0, "h_p": -1.0, "xan_p": -1.0}, "id": "XANt2pp", "gene_reaction_rule": "SF3694"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Xanthine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XANtex"]}, "metabolites": {"xan_e": -1.0, "xan_p": 1.0}, "id": "XANtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "Xanthine reversible transport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XANtpp"]}, "metabolites": {"xan_p": -1.0, "xan_c": 1.0}, "id": "XANtpp", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane Porin", "name": "XMP transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XMPtex"]}, "metabolites": {"xmp_p": 1.0, "xmp_e": -1.0}, "id": "XMPtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Xanthine phosphoribosyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XPPT"]}, "metabolites": {"xmp_c": 1.0, "ppi_c": 1.0, "prpp_c": -1.0, "xan_c": -1.0}, "id": "XPPT", "gene_reaction_rule": "SF0286"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Xanthosine hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XTSNH"]}, "metabolites": {"h2o_c": -1.0, "rib__D_c": 1.0, "xan_c": 1.0, "xtsn_c": -1.0}, "id": "XTSNH", "gene_reaction_rule": "SF0027"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Xanthosine transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XTSNtex"]}, "metabolites": {"xtsn_e": -1.0, "xtsn_p": 1.0}, "id": "XTSNtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Xylulokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLK"]}, "metabolites": {"xylu__D_c": -1.0, "xu5p__D_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "XYLK", "gene_reaction_rule": "SF0058 or SF3608"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-xylulokinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLK2"]}, "metabolites": {"xylu__L_c": -1.0, "xu5p__L_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "XYLK2", "gene_reaction_rule": "SF0058"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "L-xylulose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XYLUtex"]}, "metabolites": {"xylu__L_p": 1.0, "xylu__L_e": -1.0}, "id": "XYLUtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Transport, Inner Membrane", "name": "D-xylose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "xyl__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "xyl__D_c": 1.0}, "id": "XYLabcpp", "gene_reaction_rule": "SF3610 and SF3611 and SF3612"}, {"subsystem": "Transport, Inner Membrane", "name": "D-xylose transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLt2pp"]}, "metabolites": {"xyl__D_p": -1.0, "xyl__D_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "XYLt2pp", "gene_reaction_rule": "SF4174"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-xylose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XYLtex"]}, "metabolites": {"xyl__D_e": -1.0, "xyl__D_p": 1.0}, "id": "XYLtex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc (Zn+2) ABC transporter, efflux (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZN2abcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "zn2_p": 1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "zn2_c": -1.0}, "id": "ZN2abcpp", "gene_reaction_rule": "SF3487"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc (Zn+2) transport out via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZN2t3pp"]}, "metabolites": {"zn2_c": -1.0, "h_p": -1.0, "zn2_p": 1.0, "h_c": 1.0}, "id": "ZN2t3pp", "gene_reaction_rule": "SF3993 or SF0552"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc transport in via permease (no H+)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZN2tpp"]}, "metabolites": {"zn2_c": 1.0, "zn2_p": -1.0}, "id": "ZN2tpp", "gene_reaction_rule": "SF3080"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Zinc (Zn+2) transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ZNabcpp"]}, "metabolites": {"h2o_c": -1.0, "atp_c": -1.0, "zn2_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "pi_c": 1.0, "zn2_c": 1.0}, "id": "ZNabcpp", "gene_reaction_rule": "SF1868 and SF1869 and SF1867"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "Zinc (Zn+2) transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["Zn2tex"]}, "metabolites": {"zn2_e": -1.0, "zn2_p": 1.0}, "id": "Zn2tex", "gene_reaction_rule": "SF0289 or SF0926 or SF1823 or SF2299"}, {"subsystem": "Exchange", "name": "Ferrioxamine B fe exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxBfe_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxBfe_e": -1.0}, "id": "EX_feroxBfe_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "4 hydroxyphenylacetate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4hphac_LPAREN_e_RPAREN_", "EX_4hpa_LPAREN_e_RPAREN_"]}, "metabolites": {"4hphac_e": -1.0}, "id": "EX_4hphac_e_copy1", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "Hexanoate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HEXt2rpp"]}, "metabolites": {"hxa_p": -1.0, "hxa_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "HEXt2rpp", "gene_reaction_rule": ""}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CMCMSAD"]}, "metabolites": {"h2o_c": -1.0, "5cmhmsa_c": -1.0, "h_c": 2.0, "nad_c": -1.0, "nadh_c": 1.0, "5cmhm_c": 1.0}, "id": "CMCMSAD", "gene_reaction_rule": "SF4383"}, {"subsystem": "Transport Inner Membrane", "name": "Tartrate facilitated transport periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TARTRtpp"]}, "metabolites": {"tartr__L_p": -1.0, "tartr__L_c": 1.0}, "id": "TARTRtpp", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "4 Aminobenzoate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4abz_LPAREN_e_RPAREN_"]}, "metabolites": {"4abz_e": -1.0}, "id": "EX_4abz_e", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon metabolism", "name": "2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHEDAA"]}, "metabolites": {"24dhhed_c": -1.0, "sucsal_c": 1.0, "pyr_c": 1.0}, "id": "DHEDAA", "gene_reaction_rule": "SF4379 and rhmA"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HACD3i"]}, "metabolites": {"nad_c": -1.0, "nadh_c": 1.0, "3hocoa_c": -1.0, "3oocoa_c": 1.0, "h_c": 1.0}, "id": "HACD3i", "gene_reaction_rule": "SF2419 or SF3922"}, {"subsystem": "Transport Inner Membrane", "name": "4 hydroxyphenylacetate transport in via proton symport periplasm ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["4HOXPACt2pp"]}, "metabolites": {"4hphac_p": -1.0, "4hphac_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "4HOXPACt2pp", "gene_reaction_rule": "SF4378"}, {"subsystem": "Arginine and Proline Metabolism", "name": "1-pyrroline-5-carboxylate dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["P5CD"]}, "metabolites": {"h2o_c": -2.0, "glu__L_c": 1.0, "h_c": 1.0, "nad_c": -1.0, "1pyr5c_c": -1.0, "nadh_c": 1.0}, "id": "P5CD", "gene_reaction_rule": "putA"}, {"subsystem": "Transport Outer Membrane Porin", "name": "3 Phospho D glycerate transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["3PGtex"]}, "metabolites": {"3pg_e": -1.0, "3pg_p": 1.0}, "id": "3PGtex", "gene_reaction_rule": "SF0289 or SF1823 or SF2299"}, {"subsystem": "Transport", "name": "Octadecenoate transport via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OCDCEAt2pp"]}, "metabolites": {"ocdcea_c": 1.0, "ocdcea_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "OCDCEAt2pp", "gene_reaction_rule": "SF2424"}, {"subsystem": "Exchange", "name": "Cisaconitate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_acon_C_LPAREN_e_RPAREN_"]}, "metabolites": {"acon_C_e": -1.0}, "id": "EX_acon_C_e", "gene_reaction_rule": ""}, {"subsystem": "Transport", "name": "Glycine betaine transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["GLYBt2pp", "GLYBt6pp"]}, "metabolites": {"glyb_c": 1.0, "h_c": 1.0, "h_p": -1.0, "glyb_p": -1.0}, "id": "GLYBt2pp_copy2", "gene_reaction_rule": "SF4112"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "3 4 dihydroxyphenylacetate 2 3 dioxygenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHPDO"]}, "metabolites": {"o2_c": -1.0, "5cmhmsa_c": 1.0, "h_c": 1.0, "34dhpha_c": -1.0}, "id": "DHPDO", "gene_reaction_rule": "SF4382"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "5 carboxy 2 oxohept 3 enedioate decarboxylation", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OPTCCL"]}, "metabolites": {"h_c": -1.0, "co2_c": 1.0, "2hh24dd_c": 1.0, "5cohe_c": -1.0}, "id": "OPTCCL", "gene_reaction_rule": "SF4384"}, {"subsystem": "Arginine and Proline Metabolism", "name": "2-keto-4-methylthiobutyrate transamination", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["UNK3"]}, "metabolites": {"akg_c": 1.0, "glu__L_c": -1.0, "2kmb_c": -1.0, "met__L_c": 1.0}, "id": "UNK3", "gene_reaction_rule": "SF4151"}, {"subsystem": "Transport", "name": "Hexadecanoate transport via proton symport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HDCAt2pp"]}, "metabolites": {"hdca_c": 1.0, "h_c": 1.0, "h_p": -1.0, "hdca_p": -1.0}, "id": "HDCAt2pp", "gene_reaction_rule": "SF2421"}, {"subsystem": "Exchange", "name": "Chitobiose exchange", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_chitob_LPAREN_e_RPAREN_"]}, "metabolites": {"chitob_e": -1.0}, "id": "EX_chitob_e", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "D Tagatose 1 phosphate kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": 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"gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Trithionate Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_tton_LPAREN_e_RPAREN_"]}, "metabolites": {"tton_e": -1.0}, "id": "EX_tton_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "4-Hydroxy-L-threonine Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4hthr_LPAREN_e_RPAREN_"]}, "metabolites": {"4hthr_e": -1.0}, "id": "EX_4hthr_e", "gene_reaction_rule": ""}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "4 hydroxyphenylacetate 3 monooxygenase nadh", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HPA3MO"]}, "metabolites": {"o2_c": -1.0, "h2o_c": 1.0, "34dhpha_c": 1.0, "h_c": -1.0, "nad_c": 1.0, "4hphac_c": -1.0, "nadh_c": -1.0}, "id": "HPA3MO", "gene_reaction_rule": "SF4373 or SF4374"}, {"subsystem": "Transport", "name": "1-deoxy-d-xyluose transport", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DXYLUDtex"]}, "metabolites": {"dxyl_e": -1.0, "dxyl_p": 1.0}, "id": "DXYLUDtex", "gene_reaction_rule": "SF0289 or SF1823 or SF2299"}, {"subsystem": "Transport", "name": "Chitobiose transport via PTS", "upper_bound": 0.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHITOBpts"]}, "metabolites": {"pep_c": -1.0, "pyr_c": 1.0, "chitob_p": -1.0, "chit6p_c": 1.0}, "id": "CHITOBpts", "gene_reaction_rule": "SF1490 and SF1488 and SF1489 and SF2470 and SF2471"}, {"subsystem": "Exchange", "name": "Ferrioxamine E fe exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxEfe_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxEfe_e": -1.0}, "id": "EX_feroxEfe_e", "gene_reaction_rule": ""}, {"subsystem": "Transport Inner Membrane", "name": "Aminoimidazole riboside facilitated transport periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AIRStpp"]}, "metabolites": {"airs_p": -1.0, "airs_c": 1.0}, "id": "AIRStpp", "gene_reaction_rule": ""}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Enterobactin hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ENTERH"]}, "metabolites": {"h2o_c": -1.0, "23dhbzs3_c": 1.0, "enter_c": -1.0}, "id": "ENTERH", "gene_reaction_rule": "SF0497"}, {"subsystem": "Exchange", "name": "Ferrioxamine E exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxE_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxE_e": -1.0}, "id": "EX_feroxE_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "O-acetyl-L-serine sulfhydrylase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SLCYSS"]}, "metabolites": {"ac_c": 1.0, "acser_c": -1.0, "tsul_c": -1.0, "slcys_c": 1.0}, "id": "SLCYSS", "gene_reaction_rule": "SF2476"}, {"subsystem": "Arginine and Proline Metabolism", "name": "Proline dehydrogenase", 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"id": "UROCANH", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "2hh24dd hydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2HH24DDH1", "HPAH"]}, "metabolites": {"24dhhed_c": 1.0, "h2o_c": -1.0, "2hh24dd_c": -1.0}, "id": "2HH24DDH1_copy1", "gene_reaction_rule": "SF4380"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["HACD4i"]}, "metabolites": {"3odcoa_c": 1.0, "3hdcoa_c": -1.0, "h_c": 1.0, "nad_c": -1.0, "nadh_c": 1.0}, "id": "HACD4i", "gene_reaction_rule": "SF3922 or SF2419"}, {"subsystem": "Membrane Lipid Metabolism", "name": "3-cis-2-trans-enoyl-CoA isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CTECOAI7", "HDCOAI"]}, "metabolites": {"hdcoa_c": -1.0, "hdd2coa_c": 1.0}, "id": "CTECOAI7_copy2", "gene_reaction_rule": "SF3922"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Salmochelin S4 Fe III binding spontaneous ", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SALCHS4FEexs"]}, "metabolites": {"salchs4fe_e": 1.0, "salchs4_e": -1.0, "fe3_e": -1.0}, "id": "SALCHS4FEexs", "gene_reaction_rule": "s0001"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "5 carboxymethyl 2 hydroxymuconate delta isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CMHMI"]}, "metabolites": {"5cohe_c": 1.0, "5cmhm_c": -1.0}, "id": "CMHMI", "gene_reaction_rule": "SF4381"}, {"subsystem": "Transport Outer Membrane Porin", "name": "Citrate transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ICITtex"]}, "metabolites": {"icit_p": 1.0, "icit_e": -1.0}, "id": "ICITtex", "gene_reaction_rule": "SF0289 or SF1823 or SF2299"}, {"subsystem": "Transport", "name": "Tetradecanoate transport 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1.0, "ddca_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "DDCAt2pp", "gene_reaction_rule": "SF2425"}, {"subsystem": "Inorganic Ion Transport and Metabolism", "name": "Salmochelin s2 Fe III sequestration", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SALCHS2FEexs"]}, "metabolites": {"salchs2fe_e": 1.0, "salchs2_e": -1.0, "fe3_e": -1.0}, "id": "SALCHS2FEexs", "gene_reaction_rule": "s0001"}, {"subsystem": "Exchange", "name": "Deoxy D Ribose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_drib_LPAREN_e_RPAREN_"]}, "metabolites": {"drib_e": -1.0}, "id": "EX_drib_e", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "4-hydroxy-L-threonine transport", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["4HTHRtrpp"]}, "metabolites": {"4hthr_p": -1.0, "h_c": 1.0, "h_p": -1.0, "4hthr_c": 1.0}, "id": "4HTHRtrpp", "gene_reaction_rule": "SF3156"}, {"subsystem": "Transport", "name": "Myo-inositol transport", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["INOSTtpp"]}, "metabolites": {"inost_c": 1.0, "h_c": 1.0, "h_p": -1.0, "inost_p": -1.0}, "id": "INOSTtpp", "gene_reaction_rule": ""}, {"subsystem": "Transport Outer Membrane Porin", "name": "L cystine transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYSItex"]}, "metabolites": {"cysi__L_p": 1.0, "cysi__L_e": -1.0}, "id": "CYSItex", "gene_reaction_rule": "SF0289 or SF1823 or SF2299"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "2hh24dd hydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["2HH24DDH"]}, "metabolites": {"h2o_c": -1.0, "4h2kpi_c": 1.0, "2hh24dd_c": -1.0}, "id": "2HH24DDH", "gene_reaction_rule": "SF4380"}, {"subsystem": "Extracellular exchange", "name": "Salmochelin S4 Fe III exchange", "upper_bound": 1000.0, "lower_bound": 0.0, 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"EX_salchs2_e", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Sirohydrochlorin cobaltochelatase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DSCLCOCH"]}, "metabolites": {"dscl_c": -1.0, "codscl2_c": 1.0, "cobalt2_c": -1.0, "h_c": 2.0}, "id": "DSCLCOCH", "gene_reaction_rule": "SF3387"}, {"subsystem": "Transport Inner Membrane", "name": "(S)-Propane-1,2-diol facilitated transport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["12PPDStpp", "12PPDS2tpp"]}, "metabolites": {"12ppd__S_c": 1.0, "12ppd__S_p": -1.0}, "id": "12PPDStpp_copy2", "gene_reaction_rule": "SF4005"}, {"subsystem": "Transport Outer Membrane Porin", "name": "Aminoimidazole riboside transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AIRStex"]}, "metabolites": {"airs_p": 1.0, "airs_e": -1.0}, "id": "AIRStex", 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"2-hydroxyhepta-2,4-diene-1,7-dioate isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HHDDI"]}, "metabolites": {"2ohed_c": 1.0, "2hh24dd_c": -1.0}, "id": "HHDDI", "gene_reaction_rule": "SF4384"}, {"subsystem": "4 hydroxyphenylacetate catabolism", "name": "FAD reductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FADRx", "FLAVNADR"]}, "metabolites": {"fad_c": -1.0, "fadh2_c": 1.0, "nadh_c": -1.0, "h_c": -1.0, "nad_c": 1.0}, "id": "FADRx_copy2", "gene_reaction_rule": "SF4373"}, {"subsystem": "Transport Outer Membrane Porin", "name": "Deoxyribose transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DRIBtex"]}, "metabolites": {"drib_e": -1.0, "drib_p": 1.0}, "id": "DRIBtex", "gene_reaction_rule": "SF0289 or SF1823 or SF2299"}, {"subsystem": "Exchange", "name": "Aminoimidazole riboside exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_airs_LPAREN_e_RPAREN_"]}, "metabolites": {"airs_e": -1.0}, "id": "EX_airs_e", "gene_reaction_rule": ""}, {"subsystem": "Transport Outer Membrane Porin", "name": "Tetrathionate transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["TETtex"]}, "metabolites": {"tet_p": 1.0, "tet_e": -1.0}, "id": "TETtex", "gene_reaction_rule": "SF0289 or SF1823 or SF2299"}, {"subsystem": "Exchange", "name": "3 Phospho D glycerate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_3pg_LPAREN_e_RPAREN_"]}, "metabolites": {"3pg_e": -1.0}, "id": "EX_3pg_e", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Ferrioxamine G fe exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_feroxGfe_LPAREN_e_RPAREN_"]}, "metabolites": {"feroxGfe_e": -1.0}, "id": "EX_feroxGfe_e", "gene_reaction_rule": ""}, {"subsystem": "Cofactor and Prosthetic Group Biosynthesis", "name": "Ribosylnicotinamide kinase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RNMK"]}, "metabolites": {"rnam_c": -1.0, "nmn_c": 1.0, "h_c": 1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "RNMK", "gene_reaction_rule": "SF4422"}, {"subsystem": "Nucleotide Salvage Pathway", "name": "Uridylate kinase (dUMP)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URIDK2r"]}, "metabolites": {"dudp_c": 1.0, "dump_c": -1.0, "adp_c": 1.0, "atp_c": -1.0}, "id": "URIDK2r", "gene_reaction_rule": "SF0161"}, {"subsystem": "Transport Outer Membrane Porin", "name": "AEP transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["AEPtex"]}, "metabolites": {"AEP_e": -1.0, "AEP_p": 1.0}, "id": "AEPtex", "gene_reaction_rule": "SF0289 or SF1823 or SF2299"}, {"subsystem": "Alanine and Aspartate Metabolism", "name": "Valine-pyruvate 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{"asn__L_p": -1.0, "asn__L_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ASNt2rpp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["5DGLCNt2rpp"]}, "metabolites": {"5dglcn_p": -1.0, "5dglcn_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "5DGLCNt2rpp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "L-xylulose transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["XYLUt2pp"]}, "metabolites": {"xylu__L_c": 1.0, "xylu__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "XYLUt2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "D-allose transport via ABC system (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ALLabcpp"]}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "atp_c": -1.0, "all__D_p": -1.0, "h_c": 1.0, "adp_c": 1.0, "all__D_c": 1.0}, "id": "ALLabcpp", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Diguanylate cyclase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DGUNC"]}, "metabolites": {"cdigmp_c": 1.0, "ppi_c": 2.0, "gtp_c": -2.0}, "id": "DGUNC", "gene_reaction_rule": "SF1585 or SF1584"}, {"subsystem": "Transport; Inner Membrane", "name": "S-methylmethionine permease (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MMETt2pp"]}, "metabolites": {"mmet_p": -1.0, "h_c": 1.0, "h_p": -1.0, "mmet_c": 1.0}, "id": "MMETt2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "Cyanate transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CYNTt2pp"]}, "metabolites": {"cynt_p": -1.0, "cynt_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "CYNTt2pp", "gene_reaction_rule": ""}, {"subsystem": "purine metabolism", "name": "Deoxyadenylate kinase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DADK", "DAMPK"]}, "metabolites": {"dadp_c": 1.0, "damp_c": -1.0, "atp_c": -1.0, "adp_c": 1.0}, "id": "DADK_copy2", "gene_reaction_rule": "SF0419"}, {"subsystem": "Transport; Inner Membrane", "name": "Acetoacetate transport via proton symport  (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ACACt2pp"]}, "metabolites": {"acac_c": 1.0, "acac_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "ACACt2pp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "Cytidine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CYTDt2pp", "CYTDt2rpp"]}, "metabolites": {"cytd_c": 1.0, "cytd_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "CYTDt2pp_copy2", "gene_reaction_rule": ""}, {"subsystem": "Exchange", "name": "Fe[e] Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_fe_LPAREN_e_RPAREN_"]}, "metabolites": {"fe_e": -1.0}, "id": "EX_fe_e", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "Lactose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["LCTStpp"]}, "metabolites": {"lcts_c": 1.0, "lcts_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "LCTStpp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "Xanthosine transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["XTSNt2rpp"]}, "metabolites": {"xtsn_p": -1.0, "h_c": 1.0, "h_p": -1.0, "xtsn_c": 1.0}, "id": "XTSNt2rpp", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "L-idonate transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["IDONt2rpp"]}, "metabolites": {"idon__L_c": 1.0, "idon__L_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "IDONt2rpp", "gene_reaction_rule": ""}, {"subsystem": "Alternate Carbon Metabolism", "name": "2-oxopent-4-enoate hydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["OP4ENH"]}, "metabolites": {"h2o_c": -1.0, "4h2opntn_c": 1.0, "op4en_c": -1.0}, "id": "OP4ENH", "gene_reaction_rule": "SF4380"}, {"subsystem": "Transport; Inner Membrane", "name": "Uridine transport in via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["URIt2pp", "URIt2rpp"]}, "metabolites": {"uri_c": 1.0, "uri_p": -1.0, "h_c": 1.0, "h_p": -1.0}, "id": "URIt2pp_copy2", "gene_reaction_rule": ""}, {"subsystem": "Extracellular exchange", "name": "KO-KDO-LipidA Exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_KOKDOLIPA_LPAREN_e_RPAREN_"]}, "metabolites": {"kokdolipidA_e": -1.0}, "id": "EX_kokdolipidA_e", "gene_reaction_rule": ""}, {"subsystem": "Transport; Inner Membrane", "name": "3-hydroxycinnamic acid transport via proton symport, reversible (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HCINNMt2rpp"]}, "metabolites": {"3hcinnm_p": -1.0, "3hcinnm_c": 1.0, "h_p": -1.0, "h_c": 1.0}, "id": "HCINNMt2rpp", "gene_reaction_rule": ""}, {"subsystem": "S_Alternate_Carbon_source", "name": "N Acetyl D Galactosamine 6 phosphate isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GALAM6PISO"]}, "metabolites": {"h2o_c": -1.0, "galam6p_c": -1.0, "tag6p__D_c": 1.0, "nh4_c": 1.0}, "id": "GALAM6PISO", "gene_reaction_rule": "SF3177"}, {"subsystem": "S_Alternate_Carbon_Metabolism", "name": "Sucrose hydrolyzing enzyme", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SUCR"]}, "metabolites": {"glc__D_c": 1.0, "h2o_c": -1.0, "sucr_c": -1.0, "fru_c": 1.0}, "id": "SUCR", "gene_reaction_rule": "SF2430"}, {"subsystem": "S_Transport_Outer_Membrane_Porin", "name": "Cellobiose transport transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["CLBtex"]}, "metabolites": {"cellb_p": 1.0, "cellb_e": -1.0}, "id": "CLBtex", "gene_reaction_rule": "SF0289 or SF0926 or ompN or SF2299"}, {"subsystem": "S_", "name": "3 hydroxy phenylacetic acid exhcnage", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_3hoxpac_LPAREN_e_RPAREN_"]}, "metabolites": {"3hoxpac_e": -1.0}, "id": "EX_3hoxpac_e", "gene_reaction_rule": ""}, {"subsystem": "S_penicillin_breakdown", "name": "Penicillin transport via outer membrane porin", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PENGt1"]}, "metabolites": {"peng_e": -1.0, "peng_p": 1.0}, "id": "PENGt1", "gene_reaction_rule": "SF0289 or SF0926 or ompN or 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{"subsystem": "S_", "name": "4 hydroxy phenylacetic acid exhcnage", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4hoxpac_LPAREN_e_RPAREN_"]}, "metabolites": {"4hoxpac_e": -1.0}, "id": "EX_4hoxpac_e", "gene_reaction_rule": ""}, {"subsystem": "S_Transport_Outer_Membrane_Porin", "name": "3 hydroxyphenylacetic acid transport via diffusion extracellular to periplasm ", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["3hoxpactex"]}, "metabolites": {"3hoxpac_p": 1.0, "3hoxpac_e": -1.0}, "id": "3hoxpactex", "gene_reaction_rule": "SF0289 or SF0926 or ompN or SF2299"}, {"subsystem": "Intracellular demand", "name": "Core lipidA exhcnage", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_lipidA_core_LPAREN_e_RPAREN_"]}, "metabolites": {"lipidA_core_e_p": -1.0}, "id": "DM_lipidA_core_e_p", "gene_reaction_rule": ""}, {"subsystem": "S_penicillin_breakdown", "name": "6 aminopenicillanic acid transport via 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{"original_bigg_ids": ["SALCNtex"]}, "metabolites": {"salcn_e": -1.0, "salcn_p": 1.0}, "id": "SALCNtex", "gene_reaction_rule": "SF0289 or SF0926 or ompN or SF2299"}, {"subsystem": "S_Lipopolysaccharide_Biosynthesis_Recycling", "name": "Phosphoethanolamine lipid IVa transport via vector periplasm to extracellular", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ENLIPIDAt2ex"]}, "metabolites": {"enlipidA_LptA_p": -1.0, "enlipidA_e": 1.0, "LptA_p": 1.0}, "id": "ENLIPIDAt2ex", "gene_reaction_rule": "SF0051 and SF0640"}, {"subsystem": "S_", "name": "Penicillin G exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_peng_LPAREN_e_RPAREN_"]}, "metabolites": {"peng_e": -1.0}, "id": "EX_peng_e", "gene_reaction_rule": ""}, {"subsystem": "S_", "name": "Phenylacetic acid exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_pac_LPAREN_e_RPAREN_"]}, "metabolites": {"pac_e": -1.0}, "id": "EX_pac_e", "gene_reaction_rule": ""}, {"subsystem": "S_Alternate_Carbon_source", "name": "Raffinose hydrolase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RAFHpp"]}, "metabolites": {"melib_p": 1.0, "raffin_p": -1.0, "fru_p": 1.0, "h2o_p": -1.0}, "id": "RAFHpp", "gene_reaction_rule": "SF2430"}, {"subsystem": "S_", "name": "Salicin exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_salcn_LPAREN_e_RPAREN_"]}, "metabolites": {"salcn_e": -1.0}, "id": "EX_salcn_e", "gene_reaction_rule": ""}, {"subsystem": "S_Alternate_Carbon_source", "name": "D Galactosamine 6 phosphate isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAL6PISO"]}, "metabolites": {"acgal6p_c": -1.0, "h2o_c": -1.0, "galam6p_c": 1.0, "nh4_c": 1.0}, "id": "ACGAL6PISO", "gene_reaction_rule": "SF3177"}, {"subsystem": "S_", "name": "D Galactosamine exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_galam_LPAREN_e_RPAREN_"]}, "metabolites": {"galam_e": -1.0}, "id": "EX_galam_e", "gene_reaction_rule": ""}, {"subsystem": "S_Aromatic_Acid_Breakdown", "name": "HPA permease", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["3HOXPACt2pp"]}, "metabolites": {"3hoxpac_p": -1.0, "3hoxpac_c": 1.0, "h_c": 1.0, "h_p": -1.0}, "id": "3HOXPACt2pp", "gene_reaction_rule": "SF4378"}, {"subsystem": "S_Aromatic_Acid_Breakdown", "name": "Phenylacetic acid transport via outer membrane porin", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["PACt1"]}, "metabolites": {"pac_p": 1.0, "pac_e": -1.0}, "id": "PACt1", "gene_reaction_rule": "SF0289 or SF0926 or ompN or SF2299"}, {"subsystem": "S_Aromatic_Acid_Breakdown", "name": "HPA monooxygenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["3HPAOX"]}, "metabolites": {"o2_c": -1.0, "h2o_c": 1.0, "3hoxpac_c": -1.0, "34dhpha_c": 1.0, "h_c": -1.0, "nad_c": 1.0, "nadh_c": -1.0}, "id": "3HPAOX", "gene_reaction_rule": "SF4373 and SF4375"}, {"subsystem": "S_", "name": "Raffinose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_raffin_LPAREN_e_RPAREN_"]}, "metabolites": {"raffin_e": -1.0}, "id": "EX_raffin_e", "gene_reaction_rule": ""}, {"subsystem": "S_", "name": " O6 antigen x4 core oligosaccharide lipid A exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_o6a4colipa_LPAREN_e_RPAREN_"]}, "metabolites": {"o6a4colipa_e": -1.0}, "id": "EX_o6a4colipa_e", "gene_reaction_rule": ""}, {"subsystem": "Transport, Outer Membrane", "name": "4-hydroxyphenylacetate transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["HPAtex"]}, "metabolites": {"4hphac_p": 1.0, "4hphac_e": -1.0}, "id": "HPAtex", "gene_reaction_rule": "SF0289 or SF0926 or ompN or SF2299"}, {"subsystem": "Alternate Carbon Metabolism", "name": "2hh24dd hydratase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["2HH24DDH1", "HPAH"]}, "metabolites": {"24dhhed_c": 1.0, "h2o_c": -1.0, "2hh24dd_c": -1.0}, "id": "2HH24DDH1_copy2", "gene_reaction_rule": "SF4380"}, {"subsystem": "Alternate Carbon Metabolism", "name": "L-fucose isomerase", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["ARABDI"]}, "metabolites": {"rbl__D_c": 1.0, "arab__D_c": -1.0}, "id": "ARABDI", "gene_reaction_rule": "SF2816"}, {"subsystem": "Transport, Inner Membrane", "name": "N-Acetyl-D-galactosamine transport via PEP:Pyr PTS  (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGALptspp"]}, "metabolites": {"pep_c": -1.0, "acgal6p_c": 1.0, "pyr_c": 1.0, "acgal_p": -1.0}, "id": "ACGALptspp", "gene_reaction_rule": "SF3168 and SF3169 and SF3170 and SF3171 and SF3172"}, {"name": "D Arabinose exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_arab__D_LPAREN_e_RPAREN_"]}, "metabolites": {"arab__D_e": -1.0}, "id": "EX_arab__D_e", "gene_reaction_rule": ""}, {"subsystem": "Transport, Inner Membrane", "name": "D-arabinose transport via proton symport (periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DARBt2rpp"]}, "metabolites": {"arab__D_p": -1.0, "h_c": 1.0, "h_p": -1.0, "arab__D_c": 1.0}, "id": "DARBt2rpp", "gene_reaction_rule": "SF2851"}, {"subsystem": "Transport, Inner Membrane", "name": "D-arabinose transport via proton antiport (periplasm)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DARBt3ipp"]}, "metabolites": {"arab__D_p": 1.0, "h_c": 1.0, "h_p": -1.0, "arab__D_c": -1.0}, "id": "DARBt3ipp", "gene_reaction_rule": "SF1566"}, {"subsystem": "Alternate Carbon Metabolism", "name": "Galactosamine-6-phosphate isomerase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["ACGAL6PI"]}, "metabolites": {"acgal6p_c": -1.0, "tag6p__D_c": 1.0}, "id": "ACGAL6PI", "gene_reaction_rule": "SF3177"}, {"subsystem": "Transport, Outer Membrane Porin", "name": "D-arabinose transport via diffusion (extracellular to periplasm)", "upper_bound": 1000.0, "lower_bound": -1000.0, "notes": {"original_bigg_ids": ["DARBtex"]}, "metabolites": {"arab__D_e": -1.0, "arab__D_p": 1.0}, "id": "DARBtex", "gene_reaction_rule": "SF0289 or SF0926 or ompN or SF2299"}, {"subsystem": "Extracellular exchange", "name": "4 hydroxyphenylacetate exchange", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["EX_4hphac_LPAREN_e_RPAREN_", "EX_4hpa_LPAREN_e_RPAREN_"]}, "metabolites": {"4hphac_e": -1.0}, "id": "EX_4hphac_e_copy2", "gene_reaction_rule": ""}, {"name": "Choline dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["CHOLD"]}, "metabolites": {"chol_c": -1.0, "nadh_c": 1.0, "betald_c": 1.0, "h_c": 1.0, "nad_c": -1.0}, "id": "CHOLD", "gene_reaction_rule": "SF1240 or SF3627"}, {"name": "2,3-dehydroadipyl-CoA hydratase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DHACOAH"]}, "metabolites": {"3hadpcoa_c": 1.0, "h2o_c": -1.0, "23dhacoa_c": -1.0}, "id": "DHACOAH", "gene_reaction_rule": "SF3922 or SF2419"}, {"name": "L-sorbosone dehydrogenase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["SBDH"]}, "metabolites": {"srb1p_c": 1.0, "nadp_c": -1.0, "nadph_c": 1.0, "h_c": 1.0, "sbt6p_c": -1.0}, "id": "SBDH", "gene_reaction_rule": "SF4088"}, {"name": "Glucosyltransferase III (LPS core synthesis)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["GLCTR3"]}, "metabolites": {"udpg_c": -1.0, "udp_c": 1.0, "gggagicolipa_c": 1.0, "ggagicolipa_c": -1.0, "h_c": 1.0}, "id": "GLCTR3", "gene_reaction_rule": "SF3664"}, {"name": "UDP-L-rhamnose:flavonol-3-O-D-glucoside L-rhamnosyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["URFGTT"]}, "metabolites": {"amet_c": -1.0, "2ommb_c": 1.0, "ahcys_c": 1.0, "h_c": 1.0, "2ombz_c": -1.0}, "id": "URFGTT", "gene_reaction_rule": "SF3911"}, {"name": "Raffinose hydrolyzing enzyme", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["RAFH"]}, "metabolites": {"raffin_c": -1.0, "melib_c": 1.0, "h2o_c": -1.0, "fru_c": 1.0}, "id": "RAFH", "gene_reaction_rule": "SF2430"}, {"name": "(S)-Malate:(acceptor) oxidoreductase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["DMALRED"]}, "metabolites": {"mal__L_c": -1.0, "fadh2_c": 1.0, "oaa_c": 1.0, "fad_c": -1.0}, "id": "DMALRED", "gene_reaction_rule": "mqo"}, {"name": "S-adenosylmethione:2-demethylmenaquinone methyltransferase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["AMMQT8_2"]}, "metabolites": {"amet_c": -1.0, "ahcys_c": 1.0, "mqn8_c": 1.0, "2dmmq8_c": -1.0, "h_c": 1.0}, "id": "AMMQT8_2", "gene_reaction_rule": "SF3911"}, {"name": "Phenylpyruvate:oxygen oxidoreductase (hydroxylating,decarboxylating)", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["PPOR"]}, "metabolites": {"phpyr_c": -1.0, "o2_c": -1.0, "co2_c": 1.0, "2hyoxplac_c": 1.0}, "id": "PPOR", "gene_reaction_rule": "SF4283"}, {"name": "Beta-fructofuranosidase", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["FFSDr"]}, "metabolites": {"suc6p_c": -1.0, "g6p_c": 1.0, "h2o_c": -1.0, "fru_c": 1.0}, "id": "FFSD", "gene_reaction_rule": "SF2430"}, {"name": "Na+/malate symporter", "upper_bound": 1000.0, "lower_bound": 0.0, "notes": {"original_bigg_ids": ["MALt5"]}, "metabolites": {"na1_p": 1.0, "mal__L_p": 1.0, "mal__L_e": -1.0, "na1_e": -1.0}, "id": "MALt5", "gene_reaction_rule": "SF0891"}, {"subsystem": "Intracellular source/sink", "name": "EX thf LPAREN c RPAREN ", "upper_bound": 1000.0, "lower_bound": -1.0, "notes": {"original_bigg_ids": ["EX_thf_LPAREN_c_RPAREN_"]}, "metabolites": {"thf_c": -1.0}, "id": "SK_thf_c", "gene_reaction_rule": ""}], "genes": [{"notes": {"original_bigg_ids": ["SF0289"]}, "name": "phoE", "id": "SF0289"}, {"notes": {"original_bigg_ids": ["SF1823"]}, "name": "None", "id": "SF1823"}, {"notes": {"original_bigg_ids": ["SF0926"]}, "name": "ompF", "id": "SF0926"}, {"notes": {"original_bigg_ids": ["SF2299"]}, "name": "ompC", "id": "SF2299"}, {"notes": {"original_bigg_ids": ["SF4172"]}, "name": "malF", "id": "SF4172"}, {"notes": {"original_bigg_ids": ["SF4173"]}, "name": "malG", "id": "SF4173"}, {"notes": {"original_bigg_ids": ["SF4171"]}, "name": "malE", "id": "SF4171"}, {"notes": {"original_bigg_ids": ["SF4170"]}, "name": "malK", "id": "SF4170"}, {"notes": {"original_bigg_ids": ["SF4169"]}, "name": "lamB", "id": "SF4169"}, {"notes": {"original_bigg_ids": ["SF4273"]}, "name": "cpdB", "id": "SF4273"}, {"notes": {"original_bigg_ids": ["SF2845"]}, "name": "ygeD", "id": "SF2845"}, {"notes": {"original_bigg_ids": ["SF2846"]}, "name": "aas", "id": "SF2846"}, {"notes": {"original_bigg_ids": ["SF3587"]}, "name": "yiaE", "id": "SF3587"}, {"notes": {"original_bigg_ids": ["SF1153"]}, "name": "None", "id": "SF1153"}, {"notes": {"original_bigg_ids": ["SF0391"]}, "name": "cof", "id": "SF0391"}, {"notes": {"original_bigg_ids": ["SF1012"]}, "name": "None", "id": "SF1012"}, {"notes": {"original_bigg_ids": ["SF0170"]}, "name": "fabZ", "id": "SF0170"}, {"notes": {"original_bigg_ids": ["SF0954"]}, "name": "fabA", "id": "SF0954"}, {"notes": {"original_bigg_ids": ["SF1097"]}, "name": "fabG", "id": "SF1097"}, {"notes": {"original_bigg_ids": ["SF2399"]}, "name": "fabB", "id": "SF2399"}, {"notes": {"original_bigg_ids": ["SF1099"]}, "name": "fabF", "id": "SF1099"}, {"notes": {"original_bigg_ids": ["SF1245"]}, "name": "oppB", "id": "SF1245"}, {"notes": {"original_bigg_ids": ["SF1841"]}, "name": "None", "id": "SF1841"}, {"notes": {"original_bigg_ids": ["SF1248"]}, "name": "oppF", "id": "SF1248"}, {"notes": {"original_bigg_ids": ["SF1246"]}, "name": "oppC", "id": "SF1246"}, {"notes": {"original_bigg_ids": ["SF1247"]}, "name": "oppD", "id": "SF1247"}, {"notes": {"original_bigg_ids": ["SF0004"]}, "name": "thrC", "id": "SF0004"}, {"notes": {"original_bigg_ids": ["SF1182"]}, "name": "None", "id": "SF1182"}, {"notes": {"original_bigg_ids": ["SF1244"]}, "name": "oppA", "id": "SF1244"}, {"notes": {"original_bigg_ids": ["SF0151"]}, "name": "pfs", "id": "SF0151"}, {"notes": {"original_bigg_ids": ["SF3237"]}, "name": "yrbH", "id": "SF3237"}, {"notes": {"original_bigg_ids": ["SF2731"]}, "name": "gutQ", "id": "SF2731"}, {"notes": {"original_bigg_ids": ["SF1098"]}, "name": "acpP", "id": "SF1098"}, {"notes": {"original_bigg_ids": ["SF3867"]}, "name": "yifM", "id": "SF3867"}, {"notes": {"original_bigg_ids": ["SF1970"]}, "name": "amyA", "id": "SF1970"}, {"notes": {"original_bigg_ids": ["SF3615"]}, "name": "malS", "id": "SF3615"}, {"notes": {"original_bigg_ids": ["SF2887"]}, "name": "bglA", "id": "SF2887"}, {"notes": {"original_bigg_ids": ["SF1307"]}, "name": "goaG", "id": "SF1307"}, {"notes": {"original_bigg_ids": ["SF2689"]}, "name": "gabT", "id": "SF2689"}, {"notes": {"original_bigg_ids": ["SF1774"]}, "name": "None", "id": "SF1774"}, {"notes": {"original_bigg_ids": ["SF2690"]}, "name": "gabP", "id": "SF2690"}, {"notes": {"original_bigg_ids": ["SF2420"]}, "name": "None", "id": "SF2420"}, {"notes": {"original_bigg_ids": ["SF3921"]}, "name": "fadA", "id": "SF3921"}, {"notes": {"original_bigg_ids": ["SF1240"]}, "name": "adhE", "id": "SF1240"}, {"notes": {"original_bigg_ids": ["s0001"]}, "name": "None", "id": "s0001"}, {"notes": {"original_bigg_ids": ["SF2061"]}, "name": "cobU", "id": "SF2061"}, {"notes": {"original_bigg_ids": ["SF0175"]}, "name": "accA", "id": "SF0175"}, {"notes": {"original_bigg_ids": ["SF3293"]}, "name": "accB", "id": "SF3293"}, {"notes": {"original_bigg_ids": ["SF3294"]}, "name": "accC", "id": "SF3294"}, {"notes": {"original_bigg_ids": ["SF2392"]}, "name": "accD", "id": "SF2392"}, {"notes": {"original_bigg_ids": ["SF1123"]}, "name": "ycfX", "id": "SF1123"}, {"notes": {"original_bigg_ids": ["SF3858"]}, "name": "rfe", "id": "SF3858"}, {"notes": {"original_bigg_ids": ["SF2472"]}, "name": "crr", "id": "SF2472"}, {"notes": {"original_bigg_ids": ["SF0614"]}, "name": "nagE", "id": "SF0614"}, {"notes": {"original_bigg_ids": ["SF1105"]}, "name": "ptsG", "id": "SF1105"}, {"notes": {"original_bigg_ids": ["SF2470"]}, "name": "ptsH", "id": "SF2470"}, {"notes": {"original_bigg_ids": ["SF2471"]}, "name": "ptsI", "id": "SF2471"}, {"notes": {"original_bigg_ids": ["SF4036"]}, "name": "argB", "id": "SF4036"}, {"notes": {"original_bigg_ids": ["SF2829"]}, "name": "argA", "id": "SF2829"}, {"notes": {"original_bigg_ids": ["SF0073"]}, "name": "ilvH", "id": "SF0073"}, {"notes": {"original_bigg_ids": ["SF0072"]}, "name": "ilvI", "id": "SF0072"}, {"notes": {"original_bigg_ids": ["SF3791"]}, "name": "ilvN", "id": "SF3791"}, {"notes": {"original_bigg_ids": ["SF3790"]}, "name": "ilvB", "id": "SF3790"}, {"notes": {"original_bigg_ids": ["SF2372"]}, "name": "ackA", "id": "SF2372"}, {"notes": {"original_bigg_ids": ["SF3155"]}, "name": "tdcD", "id": "SF3155"}, {"notes": {"original_bigg_ids": ["SF1859"]}, "name": "purT", "id": "SF1859"}, {"notes": {"original_bigg_ids": ["SF2481"]}, "name": "yfeU", "id": "SF2481"}, {"notes": {"original_bigg_ids": ["SF3869"]}, "name": "wecG", "id": "SF3869"}, {"notes": {"original_bigg_ids": ["SF1410"]}, "name": "manY", "id": "SF1410"}, {"notes": {"original_bigg_ids": ["SF1409"]}, "name": "manZ", "id": "SF1409"}, {"notes": {"original_bigg_ids": ["SF1411"]}, "name": "manX", "id": "SF1411"}, {"notes": {"original_bigg_ids": ["SF2483"]}, "name": "None", "id": "SF2483"}, {"notes": {"original_bigg_ids": ["SF3260"]}, "name": "nanT", "id": "SF3260"}, {"notes": {"original_bigg_ids": ["SF4211"]}, "name": "yjhA", "id": "SF4211"}, {"notes": {"original_bigg_ids": ["SF3261"]}, "name": "nanA", "id": "SF3261"}, {"notes": {"original_bigg_ids": ["SF0271"]}, "name": "yafH", "id": "SF0271"}, {"notes": {"original_bigg_ids": ["SF1095"]}, "name": "fabH", "id": "SF1095"}, {"notes": {"original_bigg_ids": ["SF4034"]}, "name": "argE", "id": "SF4034"}, {"notes": {"original_bigg_ids": ["SF4228"]}, "name": "yjgP", "id": "SF4228"}, {"notes": {"original_bigg_ids": ["SF3241"]}, "name": "yhbG", "id": "SF3241"}, {"notes": {"original_bigg_ids": ["SF3239"]}, "name": "yrbK", "id": "SF3239"}, {"notes": {"original_bigg_ids": ["SF4227"]}, "name": "yjgQ", "id": "SF4227"}, {"notes": {"original_bigg_ids": ["SF3240"]}, "name": "yhbN", "id": "SF3240"}, {"notes": {"original_bigg_ids": ["SF1576"]}, "name": "None", "id": "SF1576"}, {"notes": {"original_bigg_ids": ["SF1280"]}, "name": "acnA", "id": "SF1280"}, {"notes": {"original_bigg_ids": ["SF0115"]}, "name": "acnB", "id": "SF0115"}, {"notes": {"original_bigg_ids": ["SF3378"]}, "name": "argD", "id": "SF3378"}, {"notes": {"original_bigg_ids": ["astC"]}, "name": "None", "id": "astC"}, {"notes": {"original_bigg_ids": ["SF1094"]}, "name": "plsX", "id": "SF1094"}, {"notes": {"original_bigg_ids": ["SF2625"]}, "name": "acpS", "id": "SF2625"}, {"notes": {"original_bigg_ids": ["SF3493"]}, "name": "yhhU", "id": "SF3493"}, {"notes": {"original_bigg_ids": ["SF1561"]}, "name": "ydeD", "id": "SF1561"}, {"notes": {"original_bigg_ids": ["SF2640"]}, "name": "yfiK", "id": "SF2640"}, {"notes": {"original_bigg_ids": ["SF4127"]}, "name": "yjcG", "id": "SF4127"}, {"notes": {"original_bigg_ids": ["SF1648"]}, "name": "add", "id": "SF1648"}, {"notes": {"original_bigg_ids": ["SF1100"]}, "name": "pabC", "id": "SF1100"}, {"notes": {"original_bigg_ids": ["SF1416"]}, "name": "pabB", "id": "SF1416"}, {"notes": {"original_bigg_ids": ["SF3379"]}, "name": "pabA", "id": "SF3379"}, {"notes": {"original_bigg_ids": ["SF3796"]}, "name": "yicP", "id": "SF3796"}, {"notes": {"original_bigg_ids": ["SF3746"]}, "name": "yieG", "id": "SF3746"}, {"notes": {"original_bigg_ids": ["SF3694"]}, "name": "yicE", "id": "SF3694"}, {"notes": {"original_bigg_ids": ["SF0419"]}, "name": "adk", "id": "SF0419"}, {"notes": {"original_bigg_ids": ["SF0117"]}, "name": "speD", "id": "SF0117"}, {"notes": {"original_bigg_ids": ["SF3878"]}, "name": "cyaA", "id": "SF3878"}, {"notes": {"original_bigg_ids": ["SF0027"]}, "name": "yaaF", "id": "SF0027"}, {"notes": {"original_bigg_ids": ["SF2458"]}, "name": "nupC", "id": "SF2458"}, {"notes": {"original_bigg_ids": ["SF2961"]}, "name": "nupG", "id": "SF2961"}, {"notes": {"original_bigg_ids": ["SF0348"]}, "name": "tsx", "id": "SF0348"}, {"notes": {"original_bigg_ids": ["SF2060"]}, "name": "cobS", "id": "SF2060"}, {"notes": {"original_bigg_ids": ["SF1522"]}, "name": "btuD", "id": "SF1522"}, {"notes": {"original_bigg_ids": ["SF0150"]}, "name": "yadT", "id": "SF0150"}, {"notes": {"original_bigg_ids": ["SF1520"]}, "name": "btuC", "id": "SF1520"}, {"notes": {"original_bigg_ids": ["SF3051"]}, "name": "exbB", "id": "SF3051"}, {"notes": {"original_bigg_ids": ["SF3050"]}, "name": "exbD", "id": "SF3050"}, {"notes": {"original_bigg_ids": ["SF4048"]}, "name": "btuB", "id": "SF4048"}, {"notes": {"original_bigg_ids": ["SF1255"]}, "name": "tonB", "id": "SF1255"}, {"notes": {"original_bigg_ids": ["SF3415"]}, "name": "yrfE", "id": "SF3415"}, {"notes": {"original_bigg_ids": ["SF3074"]}, "name": "yqiE", "id": "SF3074"}, {"notes": {"original_bigg_ids": ["SF0414"]}, "name": "apt", "id": "SF0414"}, {"notes": {"original_bigg_ids": ["SF2773"]}, "name": "cysC", "id": "SF2773"}, {"notes": {"original_bigg_ids": ["SF1150"]}, "name": "purB", "id": "SF1150"}, {"notes": {"original_bigg_ids": ["SF4332"]}, "name": "purA", "id": "SF4332"}, {"notes": {"original_bigg_ids": ["SF0616"]}, "name": "nagA", "id": "SF0616"}, {"notes": {"original_bigg_ids": ["SF0107"]}, "name": "ampD", "id": "SF0107"}, {"notes": {"original_bigg_ids": ["SF2828"]}, "name": "None", "id": "SF2828"}, {"notes": {"original_bigg_ids": ["SF2488"]}, "name": "amiA", "id": "SF2488"}, {"notes": {"original_bigg_ids": ["SF4324"]}, "name": "amiB", "id": "SF4324"}, {"notes": {"original_bigg_ids": ["SF1111"]}, "name": "ycfO", "id": "SF1111"}, {"notes": {"original_bigg_ids": ["SF0377"]}, "name": "ampG", "id": "SF0377"}, {"notes": {"original_bigg_ids": ["SF3659"]}, "name": "rfaD", "id": "SF3659"}, {"notes": {"original_bigg_ids": ["SF2927"]}, "name": "speB", "id": "SF2927"}, {"notes": {"original_bigg_ids": ["SF3062"]}, "name": "plsC", "id": "SF3062"}, {"notes": {"original_bigg_ids": ["SF4035"]}, "name": "argC", "id": "SF4035"}, {"notes": {"original_bigg_ids": ["cusB"]}, "name": "None", "id": "cusB"}, {"notes": {"original_bigg_ids": ["SF0473"]}, "name": "ylcB", "id": "SF0473"}, {"notes": {"original_bigg_ids": ["SF0474"]}, "name": "ylcC", "id": "SF0474"}, {"notes": {"original_bigg_ids": ["SF0481"]}, "name": "ybdE", "id": "SF0481"}, {"notes": {"original_bigg_ids": ["SF4078"]}, "name": "purH", "id": "SF4078"}, {"notes": {"original_bigg_ids": ["SF0453"]}, "name": "purK", "id": "SF0453"}, {"notes": {"original_bigg_ids": ["SF0454"]}, "name": "purE", "id": "SF0454"}, {"notes": {"original_bigg_ids": ["SF0570"]}, "name": "sucB", "id": "SF0570"}, {"notes": {"original_bigg_ids": ["SF0571"]}, "name": "sucA", "id": "SF0571"}, {"notes": {"original_bigg_ids": ["SF0113"]}, "name": "lpdA", "id": "SF0113"}, {"notes": {"original_bigg_ids": ["SF2649"]}, "name": "kgtP", "id": "SF2649"}, {"notes": {"original_bigg_ids": ["ddpX"]}, "name": "None", "id": "ddpX"}, {"notes": {"original_bigg_ids": ["SF3577"]}, "name": "dppC", "id": "SF3577"}, {"notes": {"original_bigg_ids": ["SF3579"]}, "name": "dppA", "id": "SF3579"}, {"notes": {"original_bigg_ids": ["SF3578"]}, "name": "dppB", "id": "SF3578"}, {"notes": {"original_bigg_ids": ["SF3576"]}, "name": "dppD", "id": "SF3576"}, {"notes": {"original_bigg_ids": ["SF3575"]}, "name": "dppF", "id": "SF3575"}, {"notes": {"original_bigg_ids": ["SF0232"]}, "name": "ddlA", "id": "SF0232"}, {"notes": {"original_bigg_ids": ["SF0089"]}, "name": "ddlB", "id": "SF0089"}, {"notes": {"original_bigg_ids": ["SF1331"]}, "name": "ycjG", "id": "SF1331"}, {"notes": {"original_bigg_ids": ["SF4152"]}, "name": "alr", "id": "SF4152"}, {"notes": {"original_bigg_ids": ["SF1179"]}, "name": "dadX", "id": "SF1179"}, {"notes": {"original_bigg_ids": ["SF0825"]}, "name": "ybjU", "id": "SF0825"}, {"notes": {"original_bigg_ids": ["SF2598"]}, "name": "glyA", "id": "SF2598"}, {"notes": {"original_bigg_ids": ["SF2366"]}, "name": "None", "id": "SF2366"}, {"notes": {"original_bigg_ids": ["SF2445"]}, "name": "None", "id": "SF2445"}, {"notes": {"original_bigg_ids": ["SF2720"]}, "name": "alaS", "id": "SF2720"}, {"notes": {"original_bigg_ids": ["SF3474"]}, "name": "livM", "id": "SF3474"}, {"notes": {"original_bigg_ids": ["SF3473"]}, "name": "livG", "id": "SF3473"}, {"notes": {"original_bigg_ids": ["SF3475"]}, "name": "livH", "id": "SF3475"}, {"notes": {"original_bigg_ids": ["SF3478"]}, "name": "livJ", "id": "SF3478"}, {"notes": {"original_bigg_ids": ["SF3472"]}, "name": "livF", "id": "SF3472"}, {"notes": {"original_bigg_ids": ["SF4278"]}, "name": "cycA", "id": "SF4278"}, {"notes": {"original_bigg_ids": ["SF1747"]}, "name": "adhP", "id": "SF1747"}, {"notes": {"original_bigg_ids": ["SF1305"]}, "name": "aldH", "id": "SF1305"}, {"notes": {"original_bigg_ids": ["SF3626"]}, "name": "aldB", "id": "SF3626"}, {"notes": {"original_bigg_ids": ["SF0450"]}, "name": "ylbB", "id": "SF0450"}, {"notes": {"original_bigg_ids": ["SF0625"]}, "name": "lnt", "id": "SF0625"}, {"notes": {"original_bigg_ids": ["SF1706"]}, "name": "lpp", "id": "SF1706"}, {"notes": {"original_bigg_ids": ["SF3057"]}, "name": "yqhE", "id": "SF3057"}, {"notes": {"original_bigg_ids": ["SF3047"]}, "name": "None", "id": "SF3047"}, {"notes": {"original_bigg_ids": ["SF0192"]}, "name": "yafB", "id": "SF0192"}, {"notes": {"original_bigg_ids": ["SF1442"]}, "name": "None", "id": "SF1442"}, {"notes": {"original_bigg_ids": ["SF3131"]}, "name": "uxaA", "id": "SF3131"}, {"notes": {"original_bigg_ids": ["SF3439"]}, "name": "malQ", "id": "SF3439"}, {"notes": {"original_bigg_ids": ["SF3259"]}, "name": "yhcJ", "id": "SF3259"}, {"notes": {"original_bigg_ids": ["SF3258"]}, "name": "yhcI", "id": "SF3258"}, {"notes": {"original_bigg_ids": ["SF0725"]}, "name": "bioA", "id": "SF0725"}, {"notes": {"original_bigg_ids": ["SF3911"]}, "name": "ubiE", "id": "SF3911"}, {"notes": {"original_bigg_ids": ["SF4066"]}, "name": "thiC", "id": "SF4066"}, {"notes": {"original_bigg_ids": ["SF2053"]}, "name": "amn", "id": "SF2053"}, {"notes": {"original_bigg_ids": ["SF2570"]}, "name": "pepB", "id": "SF2570"}, {"notes": {"original_bigg_ids": ["SF0929"]}, "name": "pepN", "id": "SF0929"}, {"notes": {"original_bigg_ids": ["SF4229"]}, "name": "pepA", "id": "SF4229"}, {"notes": {"original_bigg_ids": ["SF0285"]}, "name": "pepD", "id": "SF0285"}, {"notes": {"original_bigg_ids": ["SF1667"]}, "name": "None", "id": "SF1667"}, {"notes": {"original_bigg_ids": ["SF1266"]}, "name": "trpD", "id": "SF1266"}, {"notes": {"original_bigg_ids": ["SF1267"]}, "name": "trpE", "id": "SF1267"}, {"notes": {"original_bigg_ids": ["SF0726"]}, "name": "bioF", "id": "SF0726"}, {"notes": {"original_bigg_ids": ["SF0046"]}, "name": "apaH", "id": "SF0046"}, {"notes": {"original_bigg_ids": ["SF2876"]}, "name": "lysS", "id": "SF2876"}, {"notes": {"original_bigg_ids": ["SF0118"]}, "name": "speE", "id": "SF0118"}, {"notes": {"original_bigg_ids": ["SF3100"]}, "name": "ygiH", "id": "SF3100"}, {"notes": {"original_bigg_ids": ["SF0969"]}, "name": "None", "id": "SF0969"}, {"notes": {"original_bigg_ids": ["SF0351"]}, "name": "ribD", "id": "SF0351"}, {"notes": {"original_bigg_ids": ["SF0144"]}, "name": "fhuD", "id": "SF0144"}, {"notes": {"original_bigg_ids": ["SF0143"]}, "name": "fhuC", "id": "SF0143"}, {"notes": {"original_bigg_ids": ["SF0145"]}, "name": "fhuB", "id": "SF0145"}, {"notes": {"original_bigg_ids": ["SF3733"]}, "name": "bglF", "id": "SF3733"}, {"notes": {"original_bigg_ids": ["SF2851"]}, "name": "araE", "id": "SF2851"}, {"notes": {"original_bigg_ids": ["SF1566"]}, "name": "ydeA", "id": "SF1566"}, {"notes": {"original_bigg_ids": ["SF4108"]}, "name": "yjdE", "id": "SF4108"}, {"notes": {"original_bigg_ids": ["SF4106"]}, "name": "adiA", "id": "SF4106"}, {"notes": {"original_bigg_ids": ["SF2931"]}, "name": "speA", "id": "SF2931"}, {"notes": {"original_bigg_ids": ["SF1626"]}, "name": "None", "id": "SF1626"}, {"notes": {"original_bigg_ids": ["SF4037"]}, "name": "argH", "id": "SF4037"}, {"notes": {"original_bigg_ids": ["SF3213"]}, "name": "argG", "id": "SF3213"}, {"notes": {"original_bigg_ids": ["SF1917"]}, "name": "argS", "id": "SF1917"}, {"notes": {"original_bigg_ids": ["SF0815"]}, "name": "artM", "id": "SF0815"}, {"notes": {"original_bigg_ids": ["SF2383"]}, "name": "hisM", "id": "SF2383"}, {"notes": {"original_bigg_ids": ["SF2384"]}, "name": "hisQ", "id": "SF2384"}, {"notes": {"original_bigg_ids": ["SF0818"]}, "name": "artP", "id": "SF0818"}, {"notes": {"original_bigg_ids": ["SF0814"]}, "name": "artJ", "id": "SF0814"}, {"notes": {"original_bigg_ids": ["SF2382"]}, "name": "hisP", "id": "SF2382"}, {"notes": {"original_bigg_ids": ["SF2386"]}, "name": "argT", "id": "SF2386"}, {"notes": {"original_bigg_ids": ["SF0817"]}, "name": "artI", "id": "SF0817"}, {"notes": {"original_bigg_ids": ["SF0816"]}, "name": "artQ", "id": "SF0816"}, {"notes": {"original_bigg_ids": ["SF2908"]}, "name": "yggA", "id": "SF2908"}, {"notes": {"original_bigg_ids": ["SF3456"]}, "name": "asd", "id": "SF3456"}, {"notes": {"original_bigg_ids": ["SF4347"]}, "name": "yjfR", "id": "SF4347"}, {"notes": {"original_bigg_ids": ["SF4350"]}, "name": "ptxA", "id": "SF4350"}, {"notes": {"original_bigg_ids": ["SF4348"]}, "name": "sgaT", "id": "SF4348"}, {"notes": {"original_bigg_ids": ["SF4349"]}, "name": "sgaB", "id": "SF4349"}, {"notes": {"original_bigg_ids": ["SF1456"]}, "name": "ansA", "id": "SF1456"}, {"notes": {"original_bigg_ids": ["SF0778"]}, "name": "ybiK", "id": "SF0778"}, {"notes": {"original_bigg_ids": ["SF2954"]}, "name": "ansB", "id": "SF2954"}, {"notes": {"original_bigg_ids": ["SF0619"]}, "name": "asnB", "id": "SF0619"}, {"notes": {"original_bigg_ids": ["SF3824"]}, "name": "asnA", "id": "SF3824"}, {"notes": {"original_bigg_ids": ["SF0927"]}, "name": "asnS", "id": "SF0927"}, {"notes": {"original_bigg_ids": ["SF3535"]}, "name": "arsB", "id": "SF3535"}, {"notes": {"original_bigg_ids": ["SF0128"]}, "name": "panD", "id": "SF0128"}, {"notes": {"original_bigg_ids": ["SF4245"]}, "name": "pyrB", "id": "SF4245"}, {"notes": {"original_bigg_ids": ["SF4246"]}, "name": "pyrI", "id": "SF4246"}, {"notes": {"original_bigg_ids": ["SF4181"]}, "name": "lysC", "id": "SF4181"}, {"notes": {"original_bigg_ids": ["SF0002"]}, "name": "thrA", "id": "SF0002"}, {"notes": {"original_bigg_ids": ["SF4018"]}, "name": "metL", "id": "SF4018"}, {"notes": {"original_bigg_ids": ["SF4293"]}, "name": "aspA", "id": "SF4293"}, {"notes": {"original_bigg_ids": ["SF0925"]}, "name": "aspC", "id": "SF0925"}, {"notes": {"original_bigg_ids": ["SF1876"]}, "name": "aspS", "id": "SF1876"}, {"notes": {"original_bigg_ids": ["SF0626"]}, "name": "ybeJ", "id": "SF0626"}, {"notes": {"original_bigg_ids": ["SF0628"]}, "name": "gltK", "id": "SF0628"}, {"notes": {"original_bigg_ids": ["SF0627"]}, "name": "gltJ", "id": "SF0627"}, {"notes": {"original_bigg_ids": ["SF0629"]}, "name": "gltL", "id": "SF0629"}, {"notes": {"original_bigg_ids": ["SF3560"]}, "name": "dctA", "id": "SF3560"}, {"notes": {"original_bigg_ids": ["SF4292"]}, "name": "dcuA", "id": "SF4292"}, {"notes": {"original_bigg_ids": ["SF4100"]}, "name": "dcuB", "id": "SF4100"}, {"notes": {"original_bigg_ids": ["SF4137"]}, "name": "gltP", "id": "SF4137"}, {"notes": {"original_bigg_ids": ["SF3536"]}, "name": "arsC", "id": "SF3536"}, {"notes": {"original_bigg_ids": ["SF1070"]}, "name": "grxB", "id": "SF1070"}, {"notes": {"original_bigg_ids": ["SF1479"]}, "name": "None", "id": "SF1479"}, {"notes": {"original_bigg_ids": ["SF1556"]}, "name": "ydfG", "id": "SF1556"}, {"notes": {"original_bigg_ids": ["SF2081"]}, "name": "hisG", "id": "SF2081"}, {"notes": {"original_bigg_ids": ["SF3812"]}, "name": "atpD", "id": "SF3812"}, {"notes": {"original_bigg_ids": ["SF3815"]}, "name": "atpH", "id": "SF3815"}, {"notes": {"original_bigg_ids": ["SF3814"]}, "name": "atpA", "id": "SF3814"}, {"notes": {"original_bigg_ids": ["SF3811"]}, "name": "atpC", "id": "SF3811"}, {"notes": {"original_bigg_ids": ["SF3819"]}, "name": "atpI", "id": "SF3819"}, {"notes": {"original_bigg_ids": ["SF3813"]}, "name": "atpG", "id": "SF3813"}, {"notes": {"original_bigg_ids": ["SF3817"]}, "name": "atpE", "id": "SF3817"}, {"notes": {"original_bigg_ids": ["SF3816"]}, "name": "atpF", "id": "SF3816"}, {"notes": {"original_bigg_ids": ["SF3818"]}, "name": "atpB", "id": "SF3818"}, {"notes": {"original_bigg_ids": ["SF0777"]}, "name": "moeA", "id": "SF0777"}, {"notes": {"original_bigg_ids": ["SF3927"]}, "name": "mobB", "id": "SF3927"}, {"notes": {"original_bigg_ids": ["SF3928"]}, "name": "mobA", "id": "SF3928"}, {"notes": {"original_bigg_ids": ["SF4272"]}, "name": "cysQ", "id": "SF4272"}, {"notes": {"original_bigg_ids": ["SF0724"]}, "name": "bioB", "id": "SF0724"}, {"notes": {"original_bigg_ids": ["SF0930"]}, "name": "ycbE", "id": "SF0930"}, {"notes": {"original_bigg_ids": ["SF0251"]}, "name": "tauC", "id": "SF0251"}, {"notes": {"original_bigg_ids": ["SF0252"]}, "name": "tauB", "id": "SF0252"}, {"notes": {"original_bigg_ids": ["SF0253"]}, "name": "tauA", "id": "SF0253"}, {"notes": {"original_bigg_ids": ["ssuC"]}, "name": "None", "id": "ssuC"}, {"notes": {"original_bigg_ids": ["SF0935"]}, "name": "ycbO", "id": "SF0935"}, {"notes": {"original_bigg_ids": ["SF1219"]}, "name": "chaA", "id": "SF1219"}, {"notes": {"original_bigg_ids": ["SF4286"]}, "name": "None", "id": "SF4286"}, {"notes": {"original_bigg_ids": ["SF1496"]}, "name": "katE", "id": "SF1496"}, {"notes": {"original_bigg_ids": ["SF4020"]}, "name": "katG", "id": "SF4020"}, {"notes": {"original_bigg_ids": ["SF3236"]}, "name": "yrbG", "id": "SF3236"}, {"notes": {"original_bigg_ids": ["SF1272"]}, "name": "btuR", "id": "SF1272"}, {"notes": {"original_bigg_ids": ["SF0452"]}, "name": "arcC", "id": "SF0452"}, {"notes": {"original_bigg_ids": ["SF0029"]}, "name": "carA", "id": "SF0029"}, {"notes": {"original_bigg_ids": ["SF0030"]}, "name": "carB", "id": "SF0030"}, {"notes": {"original_bigg_ids": ["SF0389"]}, "name": "ybaX", "id": "SF0389"}, {"notes": {"original_bigg_ids": ["SF3487"]}, "name": "zntA", "id": "SF3487"}, {"notes": {"original_bigg_ids": ["SF3993"]}, "name": "yiiP", "id": "SF3993"}, {"notes": {"original_bigg_ids": ["SF0552"]}, "name": "ybgR", "id": "SF0552"}, {"notes": {"original_bigg_ids": ["SF3080"]}, "name": "ygiE", "id": "SF3080"}, {"notes": {"original_bigg_ids": ["SF3996"]}, "name": "cdh", "id": "SF3996"}, {"notes": {"original_bigg_ids": ["SF2807"]}, "name": "yqcD", "id": "SF2807"}, {"notes": {"original_bigg_ids": ["SF1211"]}, "name": "ychB", "id": "SF1211"}, {"notes": {"original_bigg_ids": ["SF1689"]}, "name": "cfa", "id": "SF1689"}, {"notes": {"original_bigg_ids": ["SF2215"]}, "name": "yehY", "id": "SF2215"}, {"notes": {"original_bigg_ids": ["SF2213"]}, "name": "yehW", "id": "SF2213"}, {"notes": {"original_bigg_ids": ["SF2214"]}, "name": "yehX", "id": "SF2214"}, {"notes": {"original_bigg_ids": ["SF2216"]}, "name": "yehZ", "id": "SF2216"}, {"notes": {"original_bigg_ids": ["SF2659"]}, "name": "pheA", "id": "SF2659"}, {"notes": {"original_bigg_ids": ["SF2660"]}, "name": "tyrA", "id": "SF2660"}, {"notes": {"original_bigg_ids": ["SF2405"]}, "name": "aroC", "id": "SF2405"}, {"notes": {"original_bigg_ids": ["SF4166"]}, "name": "ubiC", "id": "SF4166"}, {"notes": {"original_bigg_ids": ["citX"]}, "name": "None", "id": "citX"}, {"notes": {"original_bigg_ids": ["SF0532"]}, "name": "citF", "id": "SF0532"}, {"notes": {"original_bigg_ids": ["SF0534"]}, "name": "citD", "id": "SF0534"}, {"notes": {"original_bigg_ids": ["SF0533"]}, "name": "citE", "id": "SF0533"}, {"notes": {"original_bigg_ids": ["citT"]}, "name": "None", "id": "citT"}, {"notes": {"original_bigg_ids": ["SF1250"]}, "name": "cls", "id": "SF1250"}, {"notes": {"original_bigg_ids": ["SF0739"]}, "name": "ybhO", "id": "SF0739"}, {"notes": {"original_bigg_ids": ["SF1613"]}, "name": "None", "id": "SF1613"}, {"notes": {"original_bigg_ids": ["SF0147"]}, "name": "yadQ", "id": "SF0147"}, {"notes": {"original_bigg_ids": ["SF0408"]}, "name": "acrA", "id": "SF0408"}, {"notes": {"original_bigg_ids": ["SF3075"]}, "name": "tolC", "id": "SF3075"}, {"notes": {"original_bigg_ids": ["SF2512"]}, "name": "acrD", "id": "SF2512"}, {"notes": {"original_bigg_ids": ["SF3894"]}, "name": "corA", "id": "SF3894"}, {"notes": {"original_bigg_ids": ["SF2261"]}, "name": "None", "id": "SF2261"}, {"notes": {"original_bigg_ids": ["SF0910"]}, "name": "msbA", "id": "SF0910"}, {"notes": {"original_bigg_ids": ["SF2781"]}, "name": "ygcM", "id": "SF2781"}, {"notes": {"original_bigg_ids": ["SF0733"]}, "name": "moaC", "id": "SF0733"}, {"notes": {"original_bigg_ids": ["SF0731"]}, "name": "moaA", "id": "SF0731"}, {"notes": {"original_bigg_ids": ["SF2489"]}, "name": "hemF", "id": "SF2489"}, {"notes": {"original_bigg_ids": ["SF3937"]}, "name": "hemN", "id": "SF3937"}, {"notes": {"original_bigg_ids": ["SF0035"]}, "name": "caiB", "id": "SF0035"}, {"notes": {"original_bigg_ids": ["SF0034"]}, "name": "caiC", "id": "SF0034"}, {"notes": {"original_bigg_ids": ["SF0033"]}, "name": "caiD", "id": "SF0033"}, {"notes": {"original_bigg_ids": ["SF2705"]}, "name": "proV", "id": "SF2705"}, {"notes": {"original_bigg_ids": ["SF2706"]}, "name": "proW", "id": "SF2706"}, {"notes": {"original_bigg_ids": ["SF2707"]}, "name": "proX", "id": "SF2707"}, {"notes": {"original_bigg_ids": ["SF4112"]}, "name": "proP", "id": "SF4112"}, {"notes": {"original_bigg_ids": ["SF0037"]}, "name": "caiT", "id": "SF0037"}, {"notes": {"original_bigg_ids": ["SF0577"]}, "name": "gltA", "id": "SF0577"}, {"notes": {"original_bigg_ids": ["SF3922"]}, "name": "fadB", "id": "SF3922"}, {"notes": {"original_bigg_ids": ["SF2795"]}, "name": "pyrG", "id": "SF2795"}, {"notes": {"original_bigg_ids": ["SF0119"]}, "name": "yacK", "id": "SF0119"}, {"notes": {"original_bigg_ids": ["SF0429"]}, "name": "ybaR", "id": "SF0429"}, {"notes": {"original_bigg_ids": ["SF3447"]}, "name": "glpE", "id": "SF3447"}, {"notes": {"original_bigg_ids": ["SF1313"]}, "name": "pspE", "id": "SF1313"}, {"notes": {"original_bigg_ids": ["SF1962"]}, "name": "yedO", "id": "SF1962"}, {"notes": {"original_bigg_ids": ["SF3053"]}, "name": "metC", "id": "SF3053"}, {"notes": {"original_bigg_ids": ["SF3754"]}, "name": "tnaA", "id": "SF3754"}, {"notes": {"original_bigg_ids": ["SF2469"]}, "name": "cysK", "id": "SF2469"}, {"notes": {"original_bigg_ids": ["SF2476"]}, "name": "cysM", "id": "SF2476"}, {"notes": {"original_bigg_ids": ["SF2824"]}, "name": "None", "id": "SF2824"}, {"notes": {"original_bigg_ids": ["SF1647"]}, "name": "malY", "id": "SF1647"}, {"notes": {"original_bigg_ids": ["SF0457"]}, "name": "cysS", "id": "SF0457"}, {"notes": {"original_bigg_ids": ["SF0846"]}, "name": "cydD", "id": "SF0846"}, {"notes": {"original_bigg_ids": ["SF0845"]}, "name": "cydC", "id": "SF0845"}, {"notes": {"original_bigg_ids": ["SF0980"]}, "name": "appC", "id": "SF0980"}, {"notes": {"original_bigg_ids": ["SF0981"]}, "name": "appB", "id": "SF0981"}, {"notes": {"original_bigg_ids": ["SF2228"]}, "name": "cdd", "id": "SF2228"}, {"notes": {"original_bigg_ids": ["SF2247"]}, "name": "yeiK", "id": "SF2247"}, {"notes": {"original_bigg_ids": ["SF0630"]}, "name": "ybeK", "id": "SF0630"}, {"notes": {"original_bigg_ids": ["SF2130"]}, "name": "udk", "id": "SF2130"}, {"notes": {"original_bigg_ids": ["SF0906"]}, "name": "cmk", "id": "SF0906"}, {"notes": {"original_bigg_ids": ["SF3642"]}, "name": "lldP", "id": "SF3642"}, {"notes": {"original_bigg_ids": ["SF3014"]}, "name": "yghK", "id": "SF3014"}, {"notes": {"original_bigg_ids": ["SF1178"]}, "name": "dadA", "id": "SF1178"}, {"notes": {"original_bigg_ids": ["SF4163"]}, "name": "dgkA", "id": "SF4163"}, {"notes": {"original_bigg_ids": ["SF2848"]}, "name": "lysA", "id": "SF2848"}, {"notes": {"original_bigg_ids": ["SF3887"]}, "name": "dapF", "id": "SF3887"}, {"notes": {"original_bigg_ids": ["SF0165"]}, "name": "cdsA", "id": "SF0165"}, {"notes": {"original_bigg_ids": ["SF3081"]}, "name": "ribB", "id": "SF3081"}, {"notes": {"original_bigg_ids": ["SF0728"]}, "name": "bioD", "id": "SF0728"}, {"notes": {"original_bigg_ids": ["SF1494"]}, "name": "celF", "id": "SF1494"}, {"notes": {"original_bigg_ids": ["SF2129"]}, "name": "dcd", "id": "SF2129"}, {"notes": {"original_bigg_ids": ["SF2421"]}, "name": "fadL", "id": "SF2421"}, {"notes": {"original_bigg_ids": ["SF3770"]}, "name": "dgoK", "id": "SF3770"}, {"notes": {"original_bigg_ids": ["SF3986"]}, "name": "kdgT", "id": "SF3986"}, {"notes": {"original_bigg_ids": ["SF3557"]}, "name": "kdgK", "id": "SF3557"}, {"notes": {"original_bigg_ids": ["SF2661"]}, "name": "aroF", "id": "SF2661"}, {"notes": {"original_bigg_ids": ["SF0550"]}, "name": "aroG", "id": "SF0550"}, {"notes": {"original_bigg_ids": ["SF1526"]}, "name": "aroH", "id": "SF1526"}, {"notes": {"original_bigg_ids": ["SF3688"]}, "name": "gmk", "id": "SF3688"}, {"notes": {"original_bigg_ids": ["SF3846"]}, "name": "ilvD", "id": "SF3846"}, {"notes": {"original_bigg_ids": ["SF1202"]}, "name": "None", "id": "SF1202"}, {"notes": {"original_bigg_ids": ["SF1201"]}, "name": "ycgC", "id": "SF1201"}, {"notes": {"original_bigg_ids": ["SF1203"]}, "name": "None", "id": "SF1203"}, {"notes": {"original_bigg_ids": ["SF0510"]}, "name": "entA", "id": "SF0510"}, {"notes": {"original_bigg_ids": ["SF0508"]}, "name": "entE", "id": "SF0508"}, {"notes": {"original_bigg_ids": ["SF2588"]}, "name": "hcaB", "id": "SF2588"}, {"notes": {"original_bigg_ids": ["SF0028"]}, "name": "dapB", "id": "SF0028"}, {"notes": {"original_bigg_ids": ["SF2521"]}, "name": "dapA", "id": "SF2521"}, {"notes": {"original_bigg_ids": ["SF1627"]}, "name": "ydgB", "id": "SF1627"}, {"notes": {"original_bigg_ids": ["SF0045"]}, "name": "folA", "id": "SF0045"}, {"notes": {"original_bigg_ids": ["SF2391"]}, "name": "folC", "id": "SF2391"}, {"notes": {"original_bigg_ids": ["SF4008"]}, "name": "menA", "id": "SF4008"}, {"notes": {"original_bigg_ids": ["SF2341"]}, "name": "menB", "id": "SF2341"}, {"notes": {"original_bigg_ids": ["SF0561"]}, "name": "ybgC", "id": "SF0561"}, {"notes": {"original_bigg_ids": ["SF3099"]}, "name": "ygiG", "id": "SF3099"}, {"notes": {"original_bigg_ids": ["SF0946"]}, "name": "pyrD", "id": "SF0946"}, {"notes": {"original_bigg_ids": ["SF1068"]}, "name": "pyrC", "id": "SF1068"}, {"notes": {"original_bigg_ids": ["SF3217"]}, "name": "folP", "id": "SF3217"}, {"notes": {"original_bigg_ids": ["nfsB"]}, "name": "None", "id": "nfsB"}, {"notes": {"original_bigg_ids": ["SF2379"]}, "name": "folX", "id": "SF2379"}, {"notes": {"original_bigg_ids": ["SF3407"]}, "name": "aroB", "id": "SF3407"}, {"notes": {"original_bigg_ids": ["SF1723"]}, "name": "aroD", "id": "SF1723"}, {"notes": {"original_bigg_ids": ["SF0358"]}, "name": "ispA", "id": "SF0358"}, {"notes": {"original_bigg_ids": ["SF0026"]}, "name": "lytB", "id": "SF0026"}, {"notes": {"original_bigg_ids": ["SF2312"]}, "name": "ubiG", "id": "SF2312"}, {"notes": {"original_bigg_ids": ["ynfE"]}, "name": "None", "id": "ynfE"}, {"notes": {"original_bigg_ids": ["SF1611"]}, "name": "None", "id": "SF1611"}, {"notes": {"original_bigg_ids": ["ynfF"]}, "name": "None", "id": "ynfF"}, {"notes": {"original_bigg_ids": ["SF1610"]}, "name": "None", "id": "SF1610"}, {"notes": {"original_bigg_ids": ["SF1913"]}, "name": "bisZ", "id": "SF1913"}, {"notes": {"original_bigg_ids": ["SF1914"]}, "name": "yecK", "id": "SF1914"}, {"notes": {"original_bigg_ids": ["SF1875"]}, "name": "ntpA", "id": "SF1875"}, {"notes": {"original_bigg_ids": ["SF0096"]}, "name": "mutT", "id": "SF0096"}, {"notes": {"original_bigg_ids": ["SF3619"]}, "name": "yiaK", "id": "SF3619"}, {"notes": {"original_bigg_ids": ["SF0100"]}, "name": "yacE", "id": "SF0100"}, {"notes": {"original_bigg_ids": ["SF3848"]}, "name": "ilvC", "id": "SF3848"}, {"notes": {"original_bigg_ids": ["SF0362"]}, "name": "apbA", "id": "SF0362"}, {"notes": {"original_bigg_ids": ["SF4413"]}, "name": "deoC", "id": "SF4413"}, {"notes": {"original_bigg_ids": ["SF3931"]}, "name": "dsbA", "id": "SF3931"}, {"notes": {"original_bigg_ids": ["SF1174"]}, "name": "dsbB", "id": "SF1174"}, {"notes": {"original_bigg_ids": ["SF2879"]}, "name": "dsbC", "id": "SF2879"}, {"notes": {"original_bigg_ids": ["SF3854"]}, "name": "trxA", "id": "SF3854"}, {"notes": {"original_bigg_ids": ["SF4290"]}, "name": "dsbD", "id": "SF4290"}, {"notes": {"original_bigg_ids": ["SF2644"]}, "name": "trxC", "id": "SF2644"}, {"notes": {"original_bigg_ids": ["SF0523"]}, "name": "dsbG", "id": "SF0523"}, {"notes": {"original_bigg_ids": ["SF1635"]}, "name": "fumA", "id": "SF1635"}, {"notes": {"original_bigg_ids": ["SF1102"]}, "name": "tmk", "id": "SF1102"}, {"notes": {"original_bigg_ids": ["preA"]}, "name": "None", "id": "preA"}, {"notes": {"original_bigg_ids": ["SF2231"]}, "name": "None", "id": "SF2231"}, {"notes": {"original_bigg_ids": ["SF1238"]}, "name": "tdk", "id": "SF1238"}, {"notes": {"original_bigg_ids": ["SF4416"]}, "name": "deoD", "id": "SF4416"}, {"notes": {"original_bigg_ids": ["SF4414"]}, "name": "deoA", "id": "SF4414"}, {"notes": {"original_bigg_ids": ["SF3679"]}, "name": "dut", "id": "SF3679"}, {"notes": {"original_bigg_ids": ["SF2330"]}, "name": "yfaO", "id": "SF2330"}, {"notes": {"original_bigg_ids": ["SF0163"]}, "name": "yaeM", "id": "SF0163"}, {"notes": {"original_bigg_ids": ["SF0357"]}, "name": "dxs", "id": "SF0357"}, {"notes": {"original_bigg_ids": ["SF3608"]}, "name": "xylB", "id": "SF3608"}, {"notes": {"original_bigg_ids": ["SF2912"]}, "name": "epd", "id": "SF2912"}, {"notes": {"original_bigg_ids": ["SF1444"]}, "name": "gapA", "id": "SF1444"}, {"notes": {"original_bigg_ids": ["SF1293"]}, "name": "fabI", "id": "SF1293"}, {"notes": {"original_bigg_ids": ["SF3868"]}, "name": "wecF", "id": "SF3868"}, {"notes": {"original_bigg_ids": ["SF3859"]}, "name": "wzzE", "id": "SF3859"}, {"notes": {"original_bigg_ids": ["SF3866"]}, "name": "wzxE", "id": "SF3866"}, {"notes": {"original_bigg_ids": ["SF2419"]}, "name": "None", "id": "SF2419"}, {"notes": {"original_bigg_ids": ["SF1860"]}, "name": "eda", "id": "SF1860"}, {"notes": {"original_bigg_ids": ["SF1861"]}, "name": "edd", "id": "SF1861"}, {"notes": {"original_bigg_ids": ["SF1061"]}, "name": "htrB", "id": "SF1061"}, {"notes": {"original_bigg_ids": ["SF1865"]}, "name": "msbB", "id": "SF1865"}, {"notes": {"original_bigg_ids": ["SF2444"]}, "name": "ddg", "id": "SF2444"}, {"notes": {"original_bigg_ids": ["SF2794"]}, "name": "eno", "id": "SF2794"}, {"notes": {"original_bigg_ids": ["SF0495"]}, "name": "entD", "id": "SF0495"}, {"notes": {"original_bigg_ids": ["SF0497"]}, "name": "fes", "id": "SF0497"}, {"notes": {"original_bigg_ids": ["SF4024"]}, "name": "None", "id": "SF4024"}, {"notes": {"original_bigg_ids": ["SF0775"]}, "name": "mipB", "id": "SF0775"}, {"notes": {"original_bigg_ids": ["SF0772"]}, "name": "None", "id": "SF0772"}, {"notes": {"original_bigg_ids": ["SF3795"]}, "name": "uhpT", "id": "SF3795"}, {"notes": {"original_bigg_ids": ["acpH"]}, "name": "None", "id": "acpH"}, {"notes": {"original_bigg_ids": ["SF0397"]}, "name": "tesB", "id": "SF0397"}, {"notes": {"original_bigg_ids": ["SF1423"]}, "name": "fadD", "id": "SF1423"}, {"notes": {"original_bigg_ids": ["SF1529"]}, "name": "ydiD", "id": "SF1529"}, {"notes": {"original_bigg_ids": ["SF3920"]}, "name": "ubiB", "id": "SF3920"}, {"notes": {"original_bigg_ids": ["SF2779"]}, "name": "cysI", "id": "SF2779"}, {"notes": {"original_bigg_ids": ["SF2780"]}, "name": "cysJ", "id": "SF2780"}, {"notes": {"original_bigg_ids": ["SF2159"]}, "name": "None", "id": "SF2159"}, {"notes": {"original_bigg_ids": ["SF1450"]}, "name": "None", "id": "SF1450"}, {"notes": {"original_bigg_ids": ["SF2910"]}, "name": "fba", "id": "SF2910"}, {"notes": {"original_bigg_ids": ["SF2920"]}, "name": "yggF", "id": "SF2920"}, {"notes": {"original_bigg_ids": ["SF4258"]}, "name": "fbp", "id": "SF4258"}, {"notes": {"original_bigg_ids": ["SF4003"]}, "name": "glpX", "id": "SF4003"}, {"notes": {"original_bigg_ids": ["SF2816"]}, "name": "fucI", "id": "SF2816"}, {"notes": {"original_bigg_ids": ["SF2814"]}, "name": "fucA", "id": "SF2814"}, {"notes": {"original_bigg_ids": ["SF0420"]}, "name": "hemH", "id": "SF0420"}, {"notes": {"original_bigg_ids": ["SF1751"]}, "name": "fdnG", "id": "SF1751"}, {"notes": {"original_bigg_ids": ["SF1749"]}, "name": "fdnI", "id": "SF1749"}, {"notes": {"original_bigg_ids": ["SF1750"]}, "name": "fdnH", "id": "SF1750"}, {"notes": {"original_bigg_ids": ["SF3969"]}, "name": "fdoH", "id": "SF3969"}, {"notes": {"original_bigg_ids": ["SF3968"]}, "name": "fdoI", "id": "SF3968"}, {"notes": {"original_bigg_ids": ["SF0934"]}, "name": "ycbN", "id": "SF0934"}, {"notes": {"original_bigg_ids": ["SF3428"]}, "name": "feoB", "id": "SF3428"}, {"notes": {"original_bigg_ids": ["SF2457"]}, "name": "mntH", "id": "SF2457"}, {"notes": {"original_bigg_ids": ["SF0504"]}, "name": "fepD", "id": "SF0504"}, {"notes": {"original_bigg_ids": ["SF0503"]}, "name": "fepG", "id": "SF0503"}, {"notes": {"original_bigg_ids": ["SF0506"]}, "name": "fepB", "id": "SF0506"}, {"notes": {"original_bigg_ids": ["SF0502"]}, "name": "fepC", "id": "SF0502"}, {"notes": {"original_bigg_ids": ["fiu"]}, "name": "None", "id": "fiu"}, {"notes": {"original_bigg_ids": ["SF0142"]}, "name": "fhuA", "id": "SF0142"}, {"notes": {"original_bigg_ids": ["SF0496"]}, "name": "fepA", "id": "SF0496"}, {"notes": {"original_bigg_ids": ["SF0505"]}, "name": "ybdA", "id": "SF0505"}, {"notes": {"original_bigg_ids": ["SF4400"]}, "name": "fhuF", "id": "SF4400"}, {"notes": {"original_bigg_ids": ["SF4277"]}, "name": "ytfE", "id": "SF4277"}, {"notes": {"original_bigg_ids": ["SF2881"]}, "name": "fldB", "id": "SF2881"}, {"notes": {"original_bigg_ids": ["SF0609"]}, "name": "fldA", "id": "SF0609"}, {"notes": {"original_bigg_ids": ["SF4002"]}, "name": "fpr", "id": "SF4002"}, {"notes": {"original_bigg_ids": ["SF3319"]}, "name": "fmt", "id": "SF3319"}, {"notes": {"original_bigg_ids": ["SF0021"]}, "name": "ribF", "id": "SF0021"}, {"notes": {"original_bigg_ids": ["SF0936"]}, "name": "ycbP", "id": "SF0936"}, {"notes": {"original_bigg_ids": ["SF2897"]}, "name": "ygfA", "id": "SF2897"}, {"notes": {"original_bigg_ids": ["SF2441"]}, "name": "None", "id": "SF2441"}, {"notes": {"original_bigg_ids": ["SF0899"]}, "name": "focA", "id": "SF0899"}, {"notes": {"original_bigg_ids": ["SF4309"]}, "name": "frdD", "id": "SF4309"}, {"notes": {"original_bigg_ids": ["SF4311"]}, "name": "frdB", "id": "SF4311"}, {"notes": {"original_bigg_ids": ["SF4312"]}, "name": "frdA", "id": "SF4312"}, {"notes": {"original_bigg_ids": ["SF4310"]}, "name": "frdC", "id": "SF4310"}, {"notes": {"original_bigg_ids": ["SF2253"]}, "name": "fruK", "id": "SF2253"}, {"notes": {"original_bigg_ids": ["SF3390"]}, "name": "yhfN", "id": "SF3390"}, {"notes": {"original_bigg_ids": ["SF3391"]}, "name": "yhfP", "id": "SF3391"}, {"notes": {"original_bigg_ids": ["SF3392"]}, "name": "yhfQ", "id": "SF3392"}, {"notes": {"original_bigg_ids": ["frlA"]}, "name": "None", "id": "frlA"}, {"notes": {"original_bigg_ids": ["SF4199"]}, "name": "gntP", "id": "SF4199"}, {"notes": {"original_bigg_ids": ["SF2254"]}, "name": "fruB", "id": "SF2254"}, {"notes": {"original_bigg_ids": ["SF2252"]}, "name": "fruA", "id": "SF2252"}, {"notes": {"original_bigg_ids": ["SF1232"]}, "name": "purU", "id": "SF1232"}, {"notes": {"original_bigg_ids": ["SF2815"]}, "name": "fucP", "id": "SF2815"}, {"notes": {"original_bigg_ids": ["SF1634"]}, "name": "fumC", "id": "SF1634"}, {"notes": {"original_bigg_ids": ["SF0659"]}, "name": "dcuC", "id": "SF0659"}, {"notes": {"original_bigg_ids": ["SF3810"]}, "name": "glmU", "id": "SF3810"}, {"notes": {"original_bigg_ids": ["SF1006"]}, "name": "agp", "id": "SF1006"}, {"notes": {"original_bigg_ids": ["SF3863"]}, "name": "rffH", "id": "SF3863"}, {"notes": {"original_bigg_ids": ["SF2102"]}, "name": "rfbA", "id": "SF2102"}, {"notes": {"original_bigg_ids": ["SF0146"]}, "name": "hemL", "id": "SF0146"}, {"notes": {"original_bigg_ids": ["SF2580"]}, "name": "suhB", "id": "SF2580"}, {"notes": {"original_bigg_ids": ["SF4149"]}, "name": "aphA", "id": "SF4149"}, {"notes": {"original_bigg_ids": ["SF4164"]}, "name": "plsB", "id": "SF4164"}, {"notes": {"original_bigg_ids": ["SF3647"]}, "name": "gpsA", "id": "SF3647"}, {"notes": {"original_bigg_ids": ["SF2324"]}, "name": "glpB", "id": "SF2324"}, {"notes": {"original_bigg_ids": ["SF2323"]}, "name": "glpA", "id": "SF2323"}, {"notes": {"original_bigg_ids": ["SF2325"]}, "name": "glpC", "id": "SF2325"}, {"notes": {"original_bigg_ids": ["SF3448"]}, "name": "glpD", "id": "SF3448"}, {"notes": {"original_bigg_ids": ["SF0293"]}, "name": "proA", "id": "SF0293"}, {"notes": {"original_bigg_ids": ["SF0615"]}, "name": "nagB", "id": "SF0615"}, {"notes": {"original_bigg_ids": ["SF1862"]}, "name": "zwf", "id": "SF1862"}, {"notes": {"original_bigg_ids": ["SF3165"]}, "name": "yhaG", "id": "SF3165"}, {"notes": {"original_bigg_ids": ["dgoD"]}, "name": "None", "id": "dgoD"}, {"notes": {"original_bigg_ids": ["SF4387"]}, "name": "yjiZ", "id": "SF4387"}, {"notes": {"original_bigg_ids": ["SF3772"]}, "name": "dgoT", "id": "SF3772"}, {"notes": {"original_bigg_ids": ["SF2802"]}, "name": "None", "id": "SF2802"}, {"notes": {"original_bigg_ids": ["SF3164"]}, "name": "yhaU", "id": "SF3164"}, {"notes": {"original_bigg_ids": ["SF0547"]}, "name": "galK", "id": "SF0547"}, {"notes": {"original_bigg_ids": ["SF2108"]}, "name": "wcaK", "id": "SF2108"}, {"notes": {"original_bigg_ids": ["SF0548"]}, "name": "galM", "id": "SF0548"}, {"notes": {"original_bigg_ids": ["SF4104"]}, "name": "melA", "id": "SF4104"}, {"notes": {"original_bigg_ids": ["SF2154"]}, "name": "gatC", "id": "SF2154"}, {"notes": {"original_bigg_ids": ["SF2156"]}, "name": "gatA", "id": "SF2156"}, {"notes": {"original_bigg_ids": ["SF2155"]}, "name": "gatB", "id": "SF2155"}, {"notes": {"original_bigg_ids": ["SF3133"]}, "name": "exuT", "id": "SF3133"}, {"notes": {"original_bigg_ids": ["SF1236"]}, "name": "galU", "id": "SF1236"}, {"notes": {"original_bigg_ids": ["SF2235"]}, "name": "mglB", "id": "SF2235"}, {"notes": {"original_bigg_ids": ["SF2233"]}, "name": "mglC", "id": "SF2233"}, {"notes": {"original_bigg_ids": ["SF4261"]}, "name": "ytfT", "id": "SF4261"}, {"notes": {"original_bigg_ids": ["SF4260"]}, "name": "None", "id": "SF4260"}, {"notes": {"original_bigg_ids": ["SF4263"]}, "name": "ytfQ", "id": "SF4263"}, {"notes": {"original_bigg_ids": ["SF4262"]}, "name": "ytfR", "id": "SF4262"}, {"notes": {"original_bigg_ids": ["SF2234"]}, "name": "mglA", "id": "SF2234"}, {"notes": {"original_bigg_ids": ["SF2934"]}, "name": "galP", "id": "SF2934"}, {"notes": {"original_bigg_ids": ["SF2544"]}, "name": "purN", "id": "SF2544"}, {"notes": {"original_bigg_ids": ["SF1797"]}, "name": "aldA", "id": "SF1797"}, {"notes": {"original_bigg_ids": ["SF2115"]}, "name": "wcaG", "id": "SF2115"}, {"notes": {"original_bigg_ids": ["SF3690"]}, "name": "spoT", "id": "SF3690"}, {"notes": {"original_bigg_ids": ["SF2797"]}, "name": "relA", "id": "SF2797"}, {"notes": {"original_bigg_ids": ["SF2114"]}, "name": "wcaH", "id": "SF2114"}, {"notes": {"original_bigg_ids": ["SF2509"]}, "name": "yffH", "id": "SF2509"}, {"notes": {"original_bigg_ids": ["SF3809"]}, "name": "glmS", "id": "SF3809"}, {"notes": {"original_bigg_ids": ["SF1303"]}, "name": "ycjL", "id": "SF1303"}, {"notes": {"original_bigg_ids": ["SF1306"]}, "name": "ordL", "id": "SF1306"}, {"notes": {"original_bigg_ids": ["SF1302"]}, "name": "None", "id": "SF1302"}, {"notes": {"original_bigg_ids": ["SF3954"]}, "name": "yihU", "id": "SF3954"}, {"notes": {"original_bigg_ids": ["SF3455"]}, "name": "glgB", "id": "SF3455"}, {"notes": {"original_bigg_ids": ["maa"]}, "name": "None", "id": "maa"}, {"notes": {"original_bigg_ids": ["SF0121"]}, "name": "gcd", "id": "SF0121"}, {"notes": {"original_bigg_ids": ["SF0787"]}, "name": "yliI", "id": "SF0787"}, {"notes": {"original_bigg_ids": ["SF3458"]}, "name": "gntU", "id": "SF3458"}, {"notes": {"original_bigg_ids": ["SF3438"]}, "name": "gntT", "id": "SF3438"}, {"notes": {"original_bigg_ids": ["SF3440"]}, "name": "malP", "id": "SF3440"}, {"notes": {"original_bigg_ids": ["garL"]}, "name": "None", "id": "garL"}, {"notes": {"original_bigg_ids": ["SF2800"]}, "name": "ygcX", "id": "SF2800"}, {"notes": {"original_bigg_ids": ["SF2801"]}, "name": "ygcY", "id": "SF2801"}, {"notes": {"original_bigg_ids": ["SF3452"]}, "name": "glgA", "id": "SF3452"}, {"notes": {"original_bigg_ids": ["SF3668"]}, "name": "waaG", "id": "SF3668"}, {"notes": {"original_bigg_ids": ["SF1645"]}, "name": "malX", "id": "SF1645"}, {"notes": {"original_bigg_ids": ["SF3454"]}, "name": "glgX", "id": "SF3454"}, {"notes": {"original_bigg_ids": ["SF3453"]}, "name": "glgC", "id": "SF3453"}, {"notes": {"original_bigg_ids": ["SF3940"]}, "name": "glnA", "id": "SF3940"}, {"notes": {"original_bigg_ids": ["SF0613"]}, "name": "glnS", "id": "SF0613"}, {"notes": {"original_bigg_ids": ["SF0760"]}, "name": "glnQ", "id": "SF0760"}, {"notes": {"original_bigg_ids": ["SF0761"]}, "name": "glnP", "id": "SF0761"}, {"notes": {"original_bigg_ids": ["SF0762"]}, "name": "glnH", "id": "SF0762"}, {"notes": {"original_bigg_ids": ["SF2151"]}, "name": "gatD", "id": "SF2151"}, {"notes": {"original_bigg_ids": ["SF0292"]}, "name": "proB", "id": "SF0292"}, {"notes": {"original_bigg_ids": ["SF1735"]}, "name": "xasA", "id": "SF1735"}, {"notes": {"original_bigg_ids": ["SF2715"]}, "name": "gshA", "id": "SF2715"}, {"notes": {"original_bigg_ids": ["SF1734"]}, "name": "gadB", "id": "SF1734"}, {"notes": {"original_bigg_ids": ["SF1462"]}, "name": "gdhA", "id": "SF1462"}, {"notes": {"original_bigg_ids": ["SF1569"]}, "name": "yneH", "id": "SF1569"}, {"notes": {"original_bigg_ids": ["SF0430"]}, "name": "ybaS", "id": "SF0430"}, {"notes": {"original_bigg_ids": ["SF2388"]}, "name": "purF", "id": "SF2388"}, {"notes": {"original_bigg_ids": ["SF4049"]}, "name": "murI", "id": "SF4049"}, {"notes": {"original_bigg_ids": ["SF1213"]}, "name": "hemA", "id": "SF1213"}, {"notes": {"original_bigg_ids": ["SF2462"]}, "name": "gltX", "id": "SF2462"}, {"notes": {"original_bigg_ids": ["SF3693"]}, "name": "gltS", "id": "SF3693"}, {"notes": {"original_bigg_ids": ["SF0446"]}, "name": "gcl", "id": "SF0446"}, {"notes": {"original_bigg_ids": ["SF4005"]}, "name": "glpF", "id": "SF4005"}, {"notes": {"original_bigg_ids": ["SF3657"]}, "name": "kbl", "id": "SF3657"}, {"notes": {"original_bigg_ids": ["SF2322"]}, "name": "glpT", "id": "SF2322"}, {"notes": {"original_bigg_ids": ["SF3161"]}, "name": "yhaD", "id": "SF3161"}, {"notes": {"original_bigg_ids": ["SF2891"]}, "name": "gcvT", "id": "SF2891"}, {"notes": {"original_bigg_ids": ["SF2889"]}, "name": "gcvP", "id": "SF2889"}, {"notes": {"original_bigg_ids": ["SF2890"]}, "name": "gcvH", "id": "SF2890"}, {"notes": {"original_bigg_ids": ["ghrA"]}, "name": "None", "id": "ghrA"}, {"notes": {"original_bigg_ids": ["SF4004"]}, "name": "glpK", "id": "SF4004"}, {"notes": {"original_bigg_ids": ["SF0198"]}, "name": "gloB", "id": "SF0198"}, {"notes": {"original_bigg_ids": ["SF3602"]}, "name": "glyS", "id": "SF3602"}, {"notes": {"original_bigg_ids": ["SF3603"]}, "name": "glyQ", "id": "SF3603"}, {"notes": {"original_bigg_ids": ["SF2116"]}, "name": "gmd", "id": "SF2116"}, {"notes": {"original_bigg_ids": ["SF3093"]}, "name": "None", "id": "SF3093"}, {"notes": {"original_bigg_ids": ["SF0191"]}, "name": "yaeD", "id": "SF0191"}, {"notes": {"original_bigg_ids": ["SF0101"]}, "name": "guaC", "id": "SF0101"}, {"notes": {"original_bigg_ids": ["SF2553"]}, "name": "guaA", "id": "SF2553"}, {"notes": {"original_bigg_ids": ["SF2091"]}, "name": "gnd", "id": "SF2091"}, {"notes": {"original_bigg_ids": ["SF3459"]}, "name": "gntK", "id": "SF3459"}, {"notes": {"original_bigg_ids": ["SF3466"]}, "name": "ugpQ", "id": "SF3466"}, {"notes": {"original_bigg_ids": ["SF2321"]}, "name": "glpQ", "id": "SF2321"}, {"notes": {"original_bigg_ids": ["SF3649"]}, "name": "grxC", "id": "SF3649"}, {"notes": {"original_bigg_ids": ["SF0802"]}, "name": "grxA", "id": "SF0802"}, {"notes": {"original_bigg_ids": ["SF1682"]}, "name": "ydhD", "id": "SF1682"}, {"notes": {"original_bigg_ids": ["SF0422"]}, "name": "gsk", "id": "SF0422"}, {"notes": {"original_bigg_ids": ["SF3035"]}, "name": "gsp", "id": "SF3035"}, {"notes": {"original_bigg_ids": ["SF3531"]}, "name": "gor", "id": "SF3531"}, {"notes": {"original_bigg_ids": ["SF1521"]}, "name": "btuE", "id": "SF1521"}, {"notes": {"original_bigg_ids": ["SF3464"]}, "name": "ggt", "id": "SF3464"}, {"notes": {"original_bigg_ids": ["SF0781"]}, "name": "None", "id": "SF0781"}, {"notes": {"original_bigg_ids": ["SF0779"]}, "name": "None", "id": "SF0779"}, {"notes": {"original_bigg_ids": ["SF0782"]}, "name": "None", "id": "SF0782"}, {"notes": {"original_bigg_ids": ["SF0780"]}, "name": "None", "id": "SF0780"}, {"notes": {"original_bigg_ids": ["SF2938"]}, "name": "gshB", "id": "SF2938"}, {"notes": {"original_bigg_ids": ["SF2238"]}, "name": "folE", "id": "SF2238"}, {"notes": {"original_bigg_ids": ["SF1281"]}, "name": "ribA", "id": "SF1281"}, {"notes": {"original_bigg_ids": ["SF3852"]}, "name": "gppA", "id": "SF3852"}, {"notes": {"original_bigg_ids": ["SF0286"]}, "name": "gpt", "id": "SF0286"}, {"notes": {"original_bigg_ids": ["SF0122"]}, "name": "hpt", "id": "SF0122"}, {"notes": {"original_bigg_ids": ["SF3132"]}, "name": "uxaC", "id": "SF3132"}, {"notes": {"original_bigg_ids": ["SF3947"]}, "name": "None", "id": "SF3947"}, {"notes": {"original_bigg_ids": ["SF0957"]}, "name": "ompA", "id": "SF0957"}, {"notes": {"original_bigg_ids": ["SF0832"]}, "name": "aqpZ", "id": "SF0832"}, {"notes": {"original_bigg_ids": ["SF4165"]}, "name": "ubiA", "id": "SF4165"}, {"notes": {"original_bigg_ids": ["SF0123"]}, "name": "yadF", "id": "SF0123"}, {"notes": {"original_bigg_ids": ["SF0369"]}, "name": "cyoE", "id": "SF0369"}, {"notes": {"original_bigg_ids": ["SF3667"]}, "name": "waaP", "id": "SF3667"}, {"notes": {"original_bigg_ids": ["SF3661"]}, "name": "rfaC", "id": "SF3661"}, {"notes": {"original_bigg_ids": ["SF3660"]}, "name": "rfaF", "id": "SF3660"}, {"notes": {"original_bigg_ids": ["SF3669"]}, "name": "waaQ", "id": "SF3669"}, {"notes": {"original_bigg_ids": ["SF2166"]}, "name": "thiM", "id": "SF2166"}, {"notes": {"original_bigg_ids": ["SF2454"]}, "name": "glk", "id": "SF2454"}, {"notes": {"original_bigg_ids": ["SF0330"]}, "name": "yajF", "id": "SF0330"}, {"notes": {"original_bigg_ids": ["SF2082"]}, "name": "hisD", "id": "SF2082"}, {"notes": {"original_bigg_ids": ["SF2084"]}, "name": "hisB", "id": "SF2084"}, {"notes": {"original_bigg_ids": ["SF2560"]}, "name": "hisS", "id": "SF2560"}, {"notes": {"original_bigg_ids": ["SF2385"]}, "name": "hisJ", "id": "SF2385"}, {"notes": {"original_bigg_ids": ["SF0109"]}, "name": "aroP", "id": "SF0109"}, {"notes": {"original_bigg_ids": ["SF3877"]}, "name": "hemC", "id": "SF3877"}, {"notes": {"original_bigg_ids": ["SF2165"]}, "name": "thiD", "id": "SF2165"}, {"notes": {"original_bigg_ids": ["SF2473"]}, "name": "pdxK", "id": "SF2473"}, {"notes": {"original_bigg_ids": ["SF3902"]}, "name": "yigK", "id": "SF3902"}, {"notes": {"original_bigg_ids": ["SF0764"]}, "name": "ybiF", "id": "SF0764"}, {"notes": {"original_bigg_ids": ["SF0134"]}, "name": "folK", "id": "SF0134"}, {"notes": {"original_bigg_ids": ["hyi"]}, "name": "None", "id": "hyi"}, {"notes": {"original_bigg_ids": ["SF0003"]}, "name": "thrB", "id": "SF0003"}, {"notes": {"original_bigg_ids": ["SF2083"]}, "name": "hisC", "id": "SF2083"}, {"notes": {"original_bigg_ids": ["SF2869"]}, "name": "ygeT", "id": "SF2869"}, {"notes": {"original_bigg_ids": ["SF2868"]}, "name": "None", "id": "SF2868"}, {"notes": {"original_bigg_ids": ["SF2870"]}, "name": "None", "id": "SF2870"}, {"notes": {"original_bigg_ids": ["SF3044"]}, "name": "None", "id": "SF3044"}, {"notes": {"original_bigg_ids": ["SF0973"]}, "name": "hyaA", "id": "SF0973"}, {"notes": {"original_bigg_ids": ["SF0975"]}, "name": "hyaC", "id": "SF0975"}, {"notes": {"original_bigg_ids": ["SF0974"]}, "name": "hyaB", "id": "SF0974"}, {"notes": {"original_bigg_ids": ["SF3041"]}, "name": "hybC", "id": "SF3041"}, {"notes": {"original_bigg_ids": ["SF3042"]}, "name": "hybB", "id": "SF3042"}, {"notes": {"original_bigg_ids": ["SF3043"]}, "name": "hybA", "id": "SF3043"}, {"notes": {"original_bigg_ids": ["SF2577"]}, "name": "yfhO", "id": "SF2577"}, {"notes": {"original_bigg_ids": ["SF2576"]}, "name": "None", "id": "SF2576"}, {"notes": {"original_bigg_ids": ["SF3880"]}, "name": "cyaY", "id": "SF3880"}, {"notes": {"original_bigg_ids": ["SF2575"]}, "name": "yfhF", "id": "SF2575"}, {"notes": {"original_bigg_ids": ["SF1155"]}, "name": "icdA", "id": "SF1155"}, {"notes": {"original_bigg_ids": ["SF2344"]}, "name": "menF", "id": "SF2344"}, {"notes": {"original_bigg_ids": ["SF0509"]}, "name": "entB", "id": "SF0509"}, {"notes": {"original_bigg_ids": ["SF4081"]}, "name": "aceA", "id": "SF4081"}, {"notes": {"original_bigg_ids": ["SF2085"]}, "name": "hisH", "id": "SF2085"}, {"notes": {"original_bigg_ids": ["SF2087"]}, "name": "hisF", "id": "SF2087"}, {"notes": {"original_bigg_ids": ["SF1265"]}, "name": "trpC", "id": "SF1265"}, {"notes": {"original_bigg_ids": ["SF3845"]}, "name": "ilvE", "id": "SF3845"}, {"notes": {"original_bigg_ids": ["SF0022"]}, "name": "ileS", "id": "SF0022"}, {"notes": {"original_bigg_ids": ["SF0338"]}, "name": "brnQ", "id": "SF0338"}, {"notes": {"original_bigg_ids": ["SF2554"]}, "name": "guaB", "id": "SF2554"}, {"notes": {"original_bigg_ids": ["SF3202"]}, "name": "mtr", "id": "SF3202"}, {"notes": {"original_bigg_ids": ["SF3783"]}, "name": "yidK", "id": "SF3783"}, {"notes": {"original_bigg_ids": ["SF2875"]}, "name": "None", "id": "SF2875"}, {"notes": {"original_bigg_ids": ["SF0068"]}, "name": "leuB", "id": "SF0068"}, {"notes": {"original_bigg_ids": ["SF0067"]}, "name": "leuC", "id": "SF0067"}, {"notes": {"original_bigg_ids": ["SF0066"]}, "name": "leuD", "id": "SF0066"}, {"notes": {"original_bigg_ids": ["SF0069"]}, "name": "leuA", "id": "SF0069"}, {"notes": {"original_bigg_ids": ["SF0914"]}, "name": "kdsB", "id": "SF0914"}, {"notes": {"original_bigg_ids": ["SF3238"]}, "name": "yrbI", "id": "SF3238"}, {"notes": {"original_bigg_ids": ["SF1218"]}, "name": "kdsA", "id": "SF1218"}, {"notes": {"original_bigg_ids": ["SF4351"]}, "name": "sgaH", "id": "SF4351"}, {"notes": {"original_bigg_ids": ["SF1251"]}, "name": "kch", "id": "SF1251"}, {"notes": {"original_bigg_ids": ["SF1296"]}, "name": "sapD", "id": "SF1296"}, {"notes": {"original_bigg_ids": ["SF3321"]}, "name": "trkA", "id": "SF3321"}, {"notes": {"original_bigg_ids": ["SF3925"]}, "name": "trkH", "id": "SF3925"}, {"notes": {"original_bigg_ids": ["SF3828"]}, "name": "kup", "id": "SF3828"}, {"notes": {"original_bigg_ids": ["SF0044"]}, "name": "kefC", "id": "SF0044"}, {"notes": {"original_bigg_ids": ["SF0795"]}, "name": "cmr", "id": "SF0795"}, {"notes": {"original_bigg_ids": ["SF3369"]}, "name": "kefB", "id": "SF3369"}, {"notes": {"original_bigg_ids": ["SF0259"]}, "name": "ykgF", "id": "SF0259"}, {"notes": {"original_bigg_ids": ["SF0260"]}, "name": "ykgE", "id": "SF0260"}, {"notes": {"original_bigg_ids": ["SF0258"]}, "name": "ykgG", "id": "SF0258"}, {"notes": {"original_bigg_ids": ["SF3644"]}, "name": "lldD", "id": "SF3644"}, {"notes": {"original_bigg_ids": ["SF2336"]}, "name": "None", "id": "SF2336"}, {"notes": {"original_bigg_ids": ["SF2217"]}, "name": "bglX", "id": "SF2217"}, {"notes": {"original_bigg_ids": ["SF1332"]}, "name": "ycjI", "id": "SF1332"}, {"notes": {"original_bigg_ids": ["dtpB"]}, "name": "None", "id": "dtpB"}, {"notes": {"original_bigg_ids": ["SF0588"]}, "name": "ybgH", "id": "SF0588"}, {"notes": {"original_bigg_ids": ["SF1659"]}, "name": "ydgR", "id": "SF1659"}, {"notes": {"original_bigg_ids": ["SF2813"]}, "name": "fucO", "id": "SF2813"}, {"notes": {"original_bigg_ids": ["SF2255"]}, "name": "yeiO", "id": "SF2255"}, {"notes": {"original_bigg_ids": ["SF0065"]}, "name": "yabM", "id": "SF0065"}, {"notes": {"original_bigg_ids": ["SF2218"]}, "name": "dld", "id": "SF2218"}, {"notes": {"original_bigg_ids": ["SF1814"]}, "name": "ldhA", "id": "SF1814"}, {"notes": {"original_bigg_ids": ["SF4151"]}, "name": "tyrB", "id": "SF4151"}, {"notes": {"original_bigg_ids": ["SF0639"]}, "name": "leuS", "id": "SF0639"}, {"notes": {"original_bigg_ids": ["SF3476"]}, "name": "livK", "id": "SF3476"}, {"notes": {"original_bigg_ids": ["SF1678"]}, "name": "gloA", "id": "SF1678"}, {"notes": {"original_bigg_ids": ["SF0658"]}, "name": "crcA", "id": "SF0658"}, {"notes": {"original_bigg_ids": ["SF0651"]}, "name": "lipB", "id": "SF0651"}, {"notes": {"original_bigg_ids": ["SF0653"]}, "name": "lipA", "id": "SF0653"}, {"notes": {"original_bigg_ids": ["SF0172"]}, "name": "lpxB", "id": "SF0172"}, {"notes": {"original_bigg_ids": ["SF3903"]}, "name": "pldB", "id": "SF3903"}, {"notes": {"original_bigg_ids": ["SF0176"]}, "name": "ldcC", "id": "SF0176"}, {"notes": {"original_bigg_ids": ["SF2241"]}, "name": "lysP", "id": "SF2241"}, {"notes": {"original_bigg_ids": ["SF3980"]}, "name": "rhaA", "id": "SF3980"}, {"notes": {"original_bigg_ids": ["SF3984"]}, "name": "None", "id": "SF3984"}, {"notes": {"original_bigg_ids": ["SF3634"]}, "name": "mtlD", "id": "SF3634"}, {"notes": {"original_bigg_ids": ["SF0727"]}, "name": "bioC", "id": "SF0727"}, {"notes": {"original_bigg_ids": ["SF3015"]}, "name": "glcB", "id": "SF3015"}, {"notes": {"original_bigg_ids": ["SF2112"]}, "name": "cpsB", "id": "SF2112"}, {"notes": {"original_bigg_ids": ["SF1636"]}, "name": "manA", "id": "SF1636"}, {"notes": {"original_bigg_ids": ["SF4197"]}, "name": "uxuB", "id": "SF4197"}, {"notes": {"original_bigg_ids": ["SF0566"]}, "name": "hrsA", "id": "SF0566"}, {"notes": {"original_bigg_ids": ["SF0565"]}, "name": "ybgG", "id": "SF0565"}, {"notes": {"original_bigg_ids": ["SF1096"]}, "name": "fabD", "id": "SF1096"}, {"notes": {"original_bigg_ids": ["SF0141"]}, "name": "mrcB", "id": "SF0141"}, {"notes": {"original_bigg_ids": ["SF3414"]}, "name": "mrcA", "id": "SF3414"}, {"notes": {"original_bigg_ids": ["SF0081"]}, "name": "ftsI", "id": "SF0081"}, {"notes": {"original_bigg_ids": ["SF0646"]}, "name": "mrdA", "id": "SF0646"}, {"notes": {"original_bigg_ids": ["SF0789"]}, "name": "None", "id": "SF0789"}, {"notes": {"original_bigg_ids": ["SF0649"]}, "name": "dacA", "id": "SF0649"}, {"notes": {"original_bigg_ids": ["SF3222"]}, "name": "dacB", "id": "SF3222"}, {"notes": {"original_bigg_ids": ["SF2404"]}, "name": "mepA", "id": "SF2404"}, {"notes": {"original_bigg_ids": ["SF2219"]}, "name": "pbpG", "id": "SF2219"}, {"notes": {"original_bigg_ids": ["SF3276"]}, "name": "mdh", "id": "SF3276"}, {"notes": {"original_bigg_ids": ["mqo"]}, "name": "None", "id": "mqo"}, {"notes": {"original_bigg_ids": ["SF1746"]}, "name": "sfcA", "id": "SF1746"}, {"notes": {"original_bigg_ids": ["SF2505"]}, "name": "None", "id": "SF2505"}, {"notes": {"original_bigg_ids": ["SF2561"]}, "name": "gcpE", "id": "SF2561"}, {"notes": {"original_bigg_ids": ["SF2769"]}, "name": "ygbB", "id": "SF2769"}, {"notes": {"original_bigg_ids": ["SF4103"]}, "name": "melB", "id": "SF4103"}, {"notes": {"original_bigg_ids": ["SF2770"]}, "name": "ygbP", "id": "SF2770"}, {"notes": {"original_bigg_ids": ["SF2933"]}, "name": "metK", "id": "SF2933"}, {"notes": {"original_bigg_ids": ["SF0188"]}, "name": "yaeC", "id": "SF0188"}, {"notes": {"original_bigg_ids": ["SF0189"]}, "name": "yaeE", "id": "SF0189"}, {"notes": {"original_bigg_ids": ["SF0190"]}, "name": "abc", "id": "SF0190"}, {"notes": {"original_bigg_ids": ["SF3907"]}, "name": "metE", "id": "SF3907"}, {"notes": {"original_bigg_ids": ["SF4085"]}, "name": "metH", "id": "SF4085"}, {"notes": {"original_bigg_ids": ["SF4268"]}, "name": "msrA", "id": "SF4268"}, {"notes": {"original_bigg_ids": ["SF1445"]}, "name": "yeaA", "id": "SF1445"}, {"notes": {"original_bigg_ids": ["SF2179"]}, "name": "metG", "id": "SF2179"}, {"notes": {"original_bigg_ids": ["SF4248"]}, "name": "mgtA", "id": "SF4248"}, {"notes": {"original_bigg_ids": ["SF0965"]}, "name": "mgsA", "id": "SF0965"}, {"notes": {"original_bigg_ids": ["SF0340"]}, "name": "malZ", "id": "SF0340"}, {"notes": {"original_bigg_ids": ["SF2960"]}, "name": "mltC", "id": "SF2960"}, {"notes": {"original_bigg_ids": ["SF4424"]}, "name": "slt", "id": "SF4424"}, {"notes": {"original_bigg_ids": ["SF2605"]}, "name": "yfhD", "id": "SF2605"}, {"notes": {"original_bigg_ids": ["SF2827"]}, "name": "mltA", "id": "SF2827"}, {"notes": {"original_bigg_ids": ["SF1183"]}, "name": "mltE", "id": "SF1183"}, {"notes": {"original_bigg_ids": ["SF2724"]}, "name": "mltB", "id": "SF2724"}, {"notes": {"original_bigg_ids": ["SF2904"]}, "name": "ygfG", "id": "SF2904"}, {"notes": {"original_bigg_ids": ["SF2902"]}, "name": "sbm", "id": "SF2902"}, {"notes": {"original_bigg_ids": ["SF3633"]}, "name": "mtlA", "id": "SF3633"}, {"notes": {"original_bigg_ids": ["SF4198"]}, "name": "uxuA", "id": "SF4198"}, {"notes": {"original_bigg_ids": ["SF0734"]}, "name": "moaD", "id": "SF0734"}, {"notes": {"original_bigg_ids": ["SF3672"]}, "name": "kdtA", "id": "SF3672"}, {"notes": {"original_bigg_ids": ["SF0540"]}, "name": "modB", "id": "SF0540"}, {"notes": {"original_bigg_ids": ["SF0541"]}, "name": "modA", "id": "SF0541"}, {"notes": {"original_bigg_ids": ["SF0539"]}, "name": "modC", "id": "SF0539"}, {"notes": {"original_bigg_ids": ["SF0131"]}, "name": "panB", "id": "SF0131"}, {"notes": {"original_bigg_ids": ["SF0010"]}, "name": "mog", "id": "SF0010"}, {"notes": {"original_bigg_ids": ["SF2565"]}, "name": "None", "id": "SF2565"}, {"notes": {"original_bigg_ids": ["SF1075"]}, "name": "mviN", "id": "SF1075"}, {"notes": {"original_bigg_ids": ["SF0735"]}, "name": "moaE", "id": "SF0735"}, {"notes": {"original_bigg_ids": ["SF0776"]}, "name": "moeB", "id": "SF0776"}, {"notes": {"original_bigg_ids": ["SF1011"]}, "name": "None", "id": "SF1011"}, {"notes": {"original_bigg_ids": ["SF0460"]}, "name": "folD", "id": "SF0460"}, {"notes": {"original_bigg_ids": ["SF4019"]}, "name": "metF", "id": "SF4019"}, {"notes": {"original_bigg_ids": ["SF1066"]}, "name": "solA", "id": "SF1066"}, {"notes": {"original_bigg_ids": ["SF2466"]}, "name": "lig", "id": "SF2466"}, {"notes": {"original_bigg_ids": ["SF4068"]}, "name": "yjaD", "id": "SF4068"}, {"notes": {"original_bigg_ids": ["SF1113"]}, "name": "ndh", "id": "SF1113"}, {"notes": {"original_bigg_ids": ["SF2359"]}, "name": "nuoG", "id": "SF2359"}, {"notes": {"original_bigg_ids": ["SF2358"]}, "name": "nuoH", "id": "SF2358"}, {"notes": {"original_bigg_ids": ["SF2354"]}, "name": "nuoL", "id": "SF2354"}, {"notes": {"original_bigg_ids": ["SF2352"]}, "name": "nuoN", "id": "SF2352"}, {"notes": {"original_bigg_ids": ["SF2364"]}, "name": "nuoA", "id": "SF2364"}, {"notes": {"original_bigg_ids": ["SF2353"]}, "name": "nuoM", "id": "SF2353"}, {"notes": {"original_bigg_ids": ["SF2355"]}, "name": "nuoK", "id": "SF2355"}, {"notes": {"original_bigg_ids": ["SF2361"]}, "name": "nuoE", "id": "SF2361"}, {"notes": {"original_bigg_ids": ["SF2360"]}, "name": "nuoF", "id": "SF2360"}, {"notes": {"original_bigg_ids": ["SF2356"]}, "name": "nuoJ", "id": "SF2356"}, {"notes": {"original_bigg_ids": ["SF2362"]}, "name": "nuoC", "id": "SF2362"}, {"notes": {"original_bigg_ids": ["SF2363"]}, "name": "nuoB", "id": "SF2363"}, {"notes": {"original_bigg_ids": ["SF2357"]}, "name": "nuoI", "id": "SF2357"}, {"notes": {"original_bigg_ids": ["SF2674"]}, "name": "yfjB", "id": "SF2674"}, {"notes": {"original_bigg_ids": ["SF3068"]}, "name": "mdaB", "id": "SF3068"}, {"notes": {"original_bigg_ids": ["SF1486"]}, "name": "nadE", "id": "SF1486"}, {"notes": {"original_bigg_ids": ["SF4044"]}, "name": "udhA", "id": "SF4044"}, {"notes": {"original_bigg_ids": ["SF1623"]}, "name": "pntB", "id": "SF1623"}, {"notes": {"original_bigg_ids": ["SF1624"]}, "name": "pntA", "id": "SF1624"}, {"notes": {"original_bigg_ids": ["SF0928"]}, "name": "pncB", "id": "SF0928"}, {"notes": {"original_bigg_ids": ["SF1175"]}, "name": "nhaB", "id": "SF1175"}, {"notes": {"original_bigg_ids": ["SF0016"]}, "name": "nhaA", "id": "SF0016"}, {"notes": {"original_bigg_ids": ["SF2564"]}, "name": "ndk", "id": "SF2564"}, {"notes": {"original_bigg_ids": ["SF0396"]}, "name": "amtB", "id": "SF0396"}, {"notes": {"original_bigg_ids": ["SF2733"]}, "name": "None", "id": "SF2733"}, {"notes": {"original_bigg_ids": ["SF2734"]}, "name": "ygbD", "id": "SF2734"}, {"notes": {"original_bigg_ids": ["SF3495"]}, "name": "nikB", "id": "SF3495"}, {"notes": {"original_bigg_ids": ["SF3494"]}, "name": "nikA", "id": "SF3494"}, {"notes": {"original_bigg_ids": ["SF3498"]}, "name": "nikE", "id": "SF3498"}, {"notes": {"original_bigg_ids": ["SF3497"]}, "name": "nikD", "id": "SF3497"}, {"notes": {"original_bigg_ids": ["SF3496"]}, "name": "nikC", "id": "SF3496"}, {"notes": {"original_bigg_ids": ["SF4422"]}, "name": "nadR", "id": "SF4422"}, {"notes": {"original_bigg_ids": ["SF0642"]}, "name": "ybeN", "id": "SF0642"}, {"notes": {"original_bigg_ids": ["SF0553"]}, "name": "pnuC", "id": "SF0553"}, {"notes": {"original_bigg_ids": ["SF1455"]}, "name": "ydjB", "id": "SF1455"}, {"notes": {"original_bigg_ids": ["SF2059"]}, "name": "cobT", "id": "SF2059"}, {"notes": {"original_bigg_ids": ["SF0106"]}, "name": "nadC", "id": "SF0106"}, {"notes": {"original_bigg_ids": ["SF3386"]}, "name": "nirC", "id": "SF3386"}, {"notes": {"original_bigg_ids": ["SF1226"]}, "name": "narK", "id": "SF1226"}, {"notes": {"original_bigg_ids": ["SF2288"]}, "name": "napH", "id": "SF2288"}, {"notes": {"original_bigg_ids": ["SF2287"]}, "name": "napB", "id": "SF2287"}, {"notes": {"original_bigg_ids": ["SF2289"]}, "name": "napG", "id": "SF2289"}, {"notes": {"original_bigg_ids": ["SF2286"]}, "name": "napC", "id": "SF2286"}, {"notes": {"original_bigg_ids": ["SF2290"]}, "name": "napA", "id": "SF2290"}, {"notes": {"original_bigg_ids": ["SF1230"]}, "name": "narI", "id": "SF1230"}, {"notes": {"original_bigg_ids": ["SF1229"]}, "name": "narJ", "id": "SF1229"}, {"notes": {"original_bigg_ids": ["SF1227"]}, "name": "narG", "id": "SF1227"}, {"notes": {"original_bigg_ids": ["SF1228"]}, "name": "narH", "id": "SF1228"}, {"notes": {"original_bigg_ids": ["SF2599"]}, "name": "hmpA", "id": "SF2599"}, {"notes": {"original_bigg_ids": ["SF2767"]}, "name": "surE", "id": "SF2767"}, {"notes": {"original_bigg_ids": ["SF4405"]}, "name": "yjjG", "id": "SF4405"}, {"notes": {"original_bigg_ids": ["SF2367"]}, "name": "None", "id": "SF2367"}, {"notes": {"original_bigg_ids": ["SF0425"]}, "name": "ushA", "id": "SF0425"}, {"notes": {"original_bigg_ids": ["SF4320"]}, "name": "yjeQ", "id": "SF4320"}, {"notes": {"original_bigg_ids": ["hscC"]}, "name": "None", "id": "hscC"}, {"notes": {"original_bigg_ids": ["SF0982"]}, "name": "appA", "id": "SF0982"}, {"notes": {"original_bigg_ids": ["SF2796"]}, "name": "mazG", "id": "SF2796"}, {"notes": {"original_bigg_ids": ["SF2945"]}, "name": "yggV", "id": "SF2945"}, {"notes": {"original_bigg_ids": ["SF1466"]}, "name": "None", "id": "SF1466"}, {"notes": {"original_bigg_ids": ["SF0152"]}, "name": "dgt", "id": "SF0152"}, {"notes": {"original_bigg_ids": ["SF3385"]}, "name": "nirD", "id": "SF3385"}, {"notes": {"original_bigg_ids": ["SF3384"]}, "name": "nirB", "id": "SF3384"}, {"notes": {"original_bigg_ids": ["SF4132"]}, "name": "nrfC", "id": "SF4132"}, {"notes": {"original_bigg_ids": ["SF4130"]}, "name": "nrfA", "id": "SF4130"}, {"notes": {"original_bigg_ids": ["SF4131"]}, "name": "nrfB", "id": "SF4131"}, {"notes": {"original_bigg_ids": ["SF4133"]}, "name": "nrfD", "id": "SF4133"}, {"notes": {"original_bigg_ids": ["wbbJ"]}, "name": "None", "id": "wbbJ"}, {"notes": {"original_bigg_ids": ["SF2641"]}, "name": "yfiD", "id": "SF2641"}, {"notes": {"original_bigg_ids": ["SF0898"]}, "name": "pflB", "id": "SF0898"}, {"notes": {"original_bigg_ids": ["SF3154"]}, "name": "tdcE", "id": "SF3154"}, {"notes": {"original_bigg_ids": ["SF0897"]}, "name": "pflA", "id": "SF0897"}, {"notes": {"original_bigg_ids": ["SF4235"]}, "name": "argI", "id": "SF4235"}, {"notes": {"original_bigg_ids": ["SF3227"]}, "name": "ispB", "id": "SF3227"}, {"notes": {"original_bigg_ids": ["SF0902"]}, "name": "serC", "id": "SF0902"}, {"notes": {"original_bigg_ids": ["SF0620"]}, "name": "yleB", "id": "SF0620"}, {"notes": {"original_bigg_ids": ["SF1285"]}, "name": "pyrF", "id": "SF1285"}, {"notes": {"original_bigg_ids": ["SF2893"]}, "name": "ubiH", "id": "SF2893"}, {"notes": {"original_bigg_ids": ["SF3919"]}, "name": "yigC", "id": "SF3919"}, {"notes": {"original_bigg_ids": ["SF2387"]}, "name": "ubiX", "id": "SF2387"}, {"notes": {"original_bigg_ids": ["SF3913"]}, "name": "yigR", "id": "SF3913"}, {"notes": {"original_bigg_ids": ["SF2962"]}, "name": "speC", "id": "SF2962"}, {"notes": {"original_bigg_ids": ["SF3681"]}, "name": "pyrE", "id": "SF3681"}, {"notes": {"original_bigg_ids": ["SF2440"]}, "name": "None", "id": "SF2440"}, {"notes": {"original_bigg_ids": ["SF0322"]}, "name": "proC", "id": "SF0322"}, {"notes": {"original_bigg_ids": ["SF0130"]}, "name": "panC", "id": "SF0130"}, {"notes": {"original_bigg_ids": ["SF1282"]}, "name": "pgpB", "id": "SF1282"}, {"notes": {"original_bigg_ids": ["SF0084"]}, "name": "mraY", "id": "SF0084"}, {"notes": {"original_bigg_ids": ["SF2778"]}, "name": "cysH", "id": "SF2778"}, {"notes": {"original_bigg_ids": ["dosP"]}, "name": "None", "id": "dosP"}, {"notes": {"original_bigg_ids": ["SF0112"]}, "name": "aceF", "id": "SF0112"}, {"notes": {"original_bigg_ids": ["SF0111"]}, "name": "aceE", "id": "SF0111"}, {"notes": {"original_bigg_ids": ["SF1663"]}, "name": "pdxH", "id": "SF1663"}, {"notes": {"original_bigg_ids": ["SF2626"]}, "name": "pdxJ", "id": "SF2626"}, {"notes": {"original_bigg_ids": ["SF0049"]}, "name": "pdxA", "id": "SF0049"}, {"notes": {"original_bigg_ids": ["SF0538"]}, "name": "ybhA", "id": "SF0538"}, {"notes": {"original_bigg_ids": ["SF2396"]}, "name": "pdxB", "id": "SF2396"}, {"notes": {"original_bigg_ids": ["SF3580"]}, "name": "yhjW", "id": "SF3580"}, {"notes": {"original_bigg_ids": ["SF3994"]}, "name": "pfkA", "id": "SF3994"}, {"notes": {"original_bigg_ids": ["SF1507"]}, "name": "pfkB", "id": "SF1507"}, {"notes": {"original_bigg_ids": ["SF4029"]}, "name": "pflC", "id": "SF4029"}, {"notes": {"original_bigg_ids": ["SF4028"]}, "name": "pflD", "id": "SF4028"}, {"notes": {"original_bigg_ids": ["SF3216"]}, "name": "mrsA", "id": "SF3216"}, {"notes": {"original_bigg_ids": ["SF2898"]}, "name": "serA", "id": "SF2898"}, {"notes": {"original_bigg_ids": ["SF4180"]}, "name": "pgi", "id": "SF4180"}, {"notes": {"original_bigg_ids": ["SF2911"]}, "name": "pgk", "id": "SF2911"}, {"notes": {"original_bigg_ids": ["SF0888"]}, "name": "ybhE", "id": "SF0888"}, {"notes": {"original_bigg_ids": ["SF3403"]}, "name": "gph", "id": "SF3403"}, {"notes": {"original_bigg_ids": ["SF4427"]}, "name": "gpmB", "id": "SF4427"}, {"notes": {"original_bigg_ids": ["SF3651"]}, "name": "yibO", "id": "SF3651"}, {"notes": {"original_bigg_ids": ["SF0549"]}, "name": "gpmA", "id": "SF0549"}, {"notes": {"original_bigg_ids": ["SF0605"]}, "name": "pgm", "id": "SF0605"}, {"notes": {"original_bigg_ids": ["SF2717"]}, "name": "yqaB", "id": "SF2717"}, {"notes": {"original_bigg_ids": ["SF0355"]}, "name": "pgpA", "id": "SF0355"}, {"notes": {"original_bigg_ids": ["SF1955"]}, "name": "pgsA", "id": "SF1955"}, {"notes": {"original_bigg_ids": ["SF2283"]}, "name": "ccmC", "id": "SF2283"}, {"notes": {"original_bigg_ids": ["SF2285"]}, "name": "ccmA", "id": "SF2285"}, {"notes": {"original_bigg_ids": ["SF2284"]}, "name": "ccmB", "id": "SF2284"}, {"notes": {"original_bigg_ids": ["SF2281"]}, "name": "ccmE", "id": "SF2281"}, {"notes": {"original_bigg_ids": ["SF2282"]}, "name": "ccmD", "id": "SF2282"}, {"notes": {"original_bigg_ids": ["SF1518"]}, "name": "pheT", "id": "SF1518"}, {"notes": {"original_bigg_ids": ["SF1517"]}, "name": "pheS", "id": "SF1517"}, {"notes": {"original_bigg_ids": ["SF1752"]}, "name": "yddG", "id": "SF1752"}, {"notes": {"original_bigg_ids": ["SF0482"]}, "name": "pheP", "id": "SF0482"}, {"notes": {"original_bigg_ids": ["SF3034"]}, "name": "pitB", "id": "SF3034"}, {"notes": {"original_bigg_ids": ["SF3728"]}, "name": "pstC", "id": "SF3728"}, {"notes": {"original_bigg_ids": ["SF3729"]}, "name": "pstA", "id": "SF3729"}, {"notes": {"original_bigg_ids": ["SF3727"]}, "name": "pstS", "id": "SF3727"}, {"notes": {"original_bigg_ids": ["SF3730"]}, "name": "pstB", "id": "SF3730"}, {"notes": {"original_bigg_ids": ["SF3899"]}, "name": "pldA", "id": "SF3899"}, {"notes": {"original_bigg_ids": ["SF2111"]}, "name": "cpsG", "id": "SF2111"}, {"notes": {"original_bigg_ids": ["SF3435"]}, "name": "bioH", "id": "SF3435"}, {"notes": {"original_bigg_ids": ["SF4052"]}, "name": "coaA", "id": "SF4052"}, {"notes": {"original_bigg_ids": ["SF3296"]}, "name": "panF", "id": "SF3296"}, {"notes": {"original_bigg_ids": ["SF1013"]}, "name": "None", "id": "SF1013"}, {"notes": {"original_bigg_ids": ["SF1822"]}, "name": "ydbK", "id": "SF1822"}, {"notes": {"original_bigg_ids": ["SF0826"]}, "name": "poxB", "id": "SF0826"}, {"notes": {"original_bigg_ids": ["SF2546"]}, "name": "ppx", "id": "SF2546"}, {"notes": {"original_bigg_ids": ["SF4264"]}, "name": "ppa", "id": "SF4264"}, {"notes": {"original_bigg_ids": ["SF0249"]}, "name": "hemB", "id": "SF0249"}, {"notes": {"original_bigg_ids": ["SF4033"]}, "name": "ppc", "id": "SF4033"}, {"notes": {"original_bigg_ids": ["SF3678"]}, "name": "dfp", "id": "SF3678"}, {"notes": {"original_bigg_ids": ["SF3422"]}, "name": "pckA", "id": "SF3422"}, {"notes": {"original_bigg_ids": ["scpC"]}, "name": "None", "id": "scpC"}, {"notes": {"original_bigg_ids": ["SF2545"]}, "name": "ppk", "id": "SF2545"}, {"notes": {"original_bigg_ids": ["SF4415"]}, "name": "deoB", "id": "SF4415"}, {"notes": {"original_bigg_ids": ["SF3398"]}, "name": "yhfW", "id": "SF3398"}, {"notes": {"original_bigg_ids": ["SF3926"]}, "name": "hemG", "id": "SF3926"}, {"notes": {"original_bigg_ids": ["SF2583"]}, "name": "hcaT", "id": "SF2583"}, {"notes": {"original_bigg_ids": ["SF1528"]}, "name": "ppsA", "id": "SF1528"}, {"notes": {"original_bigg_ids": ["SF0230"]}, "name": "phoA", "id": "SF0230"}, {"notes": {"original_bigg_ids": ["SF4077"]}, "name": "purD", "id": "SF4077"}, {"notes": {"original_bigg_ids": ["SF2543"]}, "name": "purM", "id": "SF2543"}, {"notes": {"original_bigg_ids": ["SF2088"]}, "name": "hisI", "id": "SF2088"}, {"notes": {"original_bigg_ids": ["SF2519"]}, "name": "purC", "id": "SF2519"}, {"notes": {"original_bigg_ids": ["SF2604"]}, "name": "purL", "id": "SF2604"}, {"notes": {"original_bigg_ids": ["SF2086"]}, "name": "hisA", "id": "SF2086"}, {"notes": {"original_bigg_ids": ["SF0185"]}, "name": "proS", "id": "SF0185"}, {"notes": {"original_bigg_ids": ["SF1210"]}, "name": "prsA", "id": "SF1210"}, {"notes": {"original_bigg_ids": ["SF0903"]}, "name": "aroA", "id": "SF0903"}, {"notes": {"original_bigg_ids": ["SF4318"]}, "name": "psd", "id": "SF4318"}, {"notes": {"original_bigg_ids": ["SF4420"]}, "name": "serB", "id": "SF4420"}, {"notes": {"original_bigg_ids": ["SF2647"]}, "name": "pssA", "id": "SF2647"}, {"notes": {"original_bigg_ids": ["SF2373"]}, "name": "pta", "id": "SF2373"}, {"notes": {"original_bigg_ids": ["SF3673"]}, "name": "kdtB", "id": "SF3673"}, {"notes": {"original_bigg_ids": ["SF0604"]}, "name": "potE", "id": "SF0604"}, {"notes": {"original_bigg_ids": ["SF3114"]}, "name": "ygjG", "id": "SF3114"}, {"notes": {"original_bigg_ids": ["SF0808"]}, "name": "potF", "id": "SF0808"}, {"notes": {"original_bigg_ids": ["SF1126"]}, "name": "potC", "id": "SF1126"}, {"notes": {"original_bigg_ids": ["SF0810"]}, "name": "potH", "id": "SF0810"}, {"notes": {"original_bigg_ids": ["SF0811"]}, "name": "potI", "id": "SF0811"}, {"notes": {"original_bigg_ids": ["SF1125"]}, "name": "potD", "id": "SF1125"}, {"notes": {"original_bigg_ids": ["SF1127"]}, "name": "potB", "id": "SF1127"}, {"notes": {"original_bigg_ids": ["SF1128"]}, "name": "potA", "id": "SF1128"}, {"notes": {"original_bigg_ids": ["SF0809"]}, "name": "potG", "id": "SF0809"}, {"notes": {"original_bigg_ids": ["SF1301"]}, "name": "ycjJ", "id": "SF1301"}, {"notes": {"original_bigg_ids": ["SF1661"]}, "name": "pdxY", "id": "SF1661"}, {"notes": {"original_bigg_ids": ["SF3904"]}, "name": "yigL", "id": "SF3904"}, {"notes": {"original_bigg_ids": ["SF1864"]}, "name": "pykA", "id": "SF1864"}, {"notes": {"original_bigg_ids": ["SF1705"]}, "name": "pykF", "id": "SF1705"}, {"notes": {"original_bigg_ids": ["SF3909"]}, "name": "udp", "id": "SF3909"}, {"notes": {"original_bigg_ids": ["SF1015"]}, "name": "None", "id": "SF1015"}, {"notes": {"original_bigg_ids": ["SF1010"]}, "name": "None", "id": "SF1010"}, {"notes": {"original_bigg_ids": ["SF3069"]}, "name": "ygiN", "id": "SF3069"}, {"notes": {"original_bigg_ids": ["SF1722"]}, "name": "ydiB", "id": "SF1722"}, {"notes": {"original_bigg_ids": ["SF0554"]}, "name": "nadA", "id": "SF0554"}, {"notes": {"original_bigg_ids": ["SF1690"]}, "name": "ribE", "id": "SF1690"}, {"notes": {"original_bigg_ids": ["SF0352"]}, "name": "ribH", "id": "SF0352"}, {"notes": {"original_bigg_ids": ["SF3835"]}, "name": "rbsK", "id": "SF3835"}, {"notes": {"original_bigg_ids": ["SF0058"]}, "name": "araB", "id": "SF0058"}, {"notes": {"original_bigg_ids": ["SF4353"]}, "name": "sgaE", "id": "SF4353"}, {"notes": {"original_bigg_ids": ["SF0056"]}, "name": "araD", "id": "SF0056"}, {"notes": {"original_bigg_ids": ["SF2714"]}, "name": "ygaG", "id": "SF2714"}, {"notes": {"original_bigg_ids": ["SF3981"]}, "name": "rhaB", "id": "SF3981"}, {"notes": {"original_bigg_ids": ["SF3979"]}, "name": "rhaD", "id": "SF3979"}, {"notes": {"original_bigg_ids": ["SF2317"]}, "name": "nrdB", "id": "SF2317"}, {"notes": {"original_bigg_ids": ["SF2316"]}, "name": "nrdA", "id": "SF2316"}, {"notes": {"original_bigg_ids": ["SF2704"]}, "name": "nrdF", "id": "SF2704"}, {"notes": {"original_bigg_ids": ["SF2703"]}, "name": "nrdE", "id": "SF2703"}, {"notes": {"original_bigg_ids": ["SF4253"]}, "name": "nrdG", "id": "SF4253"}, {"notes": {"original_bigg_ids": ["SF4252"]}, "name": "nrdD", "id": "SF4252"}, {"notes": {"original_bigg_ids": ["SF3404"]}, "name": "rpe", "id": "SF3404"}, {"notes": {"original_bigg_ids": ["SF2899"]}, "name": "rpiA", "id": "SF2899"}, {"notes": {"original_bigg_ids": ["SF0643"]}, "name": "phpB", "id": "SF0643"}, {"notes": {"original_bigg_ids": ["SF1711"]}, "name": "ynhC", "id": "SF1711"}, {"notes": {"original_bigg_ids": ["SF1712"]}, "name": "ynhD", "id": "SF1712"}, {"notes": {"original_bigg_ids": ["SF1713"]}, "name": "ynhE", "id": "SF1713"}, {"notes": {"original_bigg_ids": ["sufS"]}, "name": "None", "id": "sufS"}, {"notes": {"original_bigg_ids": ["SF1708"]}, "name": "ynhA", "id": "SF1708"}, {"notes": {"original_bigg_ids": ["SF1714"]}, "name": "ydiC", "id": "SF1714"}, {"notes": {"original_bigg_ids": ["SF0272"]}, "name": "gmhA", "id": "SF0272"}, {"notes": {"original_bigg_ids": ["astB"]}, "name": "None", "id": "astB"}, {"notes": {"original_bigg_ids": ["SF2775"]}, "name": "cysD", "id": "SF2775"}, {"notes": {"original_bigg_ids": ["SF2774"]}, "name": "cysN", "id": "SF2774"}, {"notes": {"original_bigg_ids": ["SF2728"]}, "name": "srlD", "id": "SF2728"}, {"notes": {"original_bigg_ids": ["SF2514"]}, "name": "dapE", "id": "SF2514"}, {"notes": {"original_bigg_ids": ["SF3629"]}, "name": "selA", "id": "SF3629"}, {"notes": {"original_bigg_ids": ["SF1459"]}, "name": "selD", "id": "SF1459"}, {"notes": {"original_bigg_ids": ["SF2343"]}, "name": "menD", "id": "SF2343"}, {"notes": {"original_bigg_ids": ["SF0498"]}, "name": "entF", "id": "SF0498"}, {"notes": {"original_bigg_ids": ["SF3646"]}, "name": "cysE", "id": "SF3646"}, {"notes": {"original_bigg_ids": ["SF2433"]}, "name": "dsdA", "id": "SF2433"}, {"notes": {"original_bigg_ids": ["SF1414"]}, "name": "sdaA", "id": "SF1414"}, {"notes": {"original_bigg_ids": ["SF2811"]}, "name": "sdaB", "id": "SF2811"}, {"notes": {"original_bigg_ids": ["SF0852"]}, "name": "serS", "id": "SF0852"}, {"notes": {"original_bigg_ids": ["SF2810"]}, "name": "sdaC", "id": "SF2810"}, {"notes": {"original_bigg_ids": ["SF3156"]}, "name": "tdcC", "id": "SF3156"}, {"notes": {"original_bigg_ids": ["SF3129"]}, "name": "ygjU", "id": "SF3129"}, {"notes": {"original_bigg_ids": ["SF1482"]}, "name": "ydjS", "id": "SF1482"}, {"notes": {"original_bigg_ids": ["SF1480"]}, "name": "None", "id": "SF1480"}, {"notes": {"original_bigg_ids": ["SF2342"]}, "name": "yfbB", "id": "SF2342"}, {"notes": {"original_bigg_ids": ["SF3387"]}, "name": "cysG", "id": "SF3387"}, {"notes": {"original_bigg_ids": ["SF3313"]}, "name": "aroE", "id": "SF3313"}, {"notes": {"original_bigg_ids": ["SF3408"]}, "name": "aroK", "id": "SF3408"}, {"notes": {"original_bigg_ids": ["SF0324"]}, "name": "aroL", "id": "SF0324"}, {"notes": {"original_bigg_ids": ["SF4017"]}, "name": "metB", "id": "SF4017"}, {"notes": {"original_bigg_ids": ["SF3699"]}, "name": "shiA", "id": "SF3699"}, {"notes": {"original_bigg_ids": ["SF1209"]}, "name": "ychM", "id": "SF1209"}, {"notes": {"original_bigg_ids": ["SF1620"]}, "name": "None", "id": "SF1620"}, {"notes": {"original_bigg_ids": ["SF1621"]}, "name": "None", "id": "SF1621"}, {"notes": {"original_bigg_ids": ["SF1684"]}, "name": "sodB", "id": "SF1684"}, {"notes": {"original_bigg_ids": ["SF3985"]}, "name": "sodA", "id": "SF3985"}, {"notes": {"original_bigg_ids": ["SF1673"]}, "name": "sodC", "id": "SF1673"}, {"notes": {"original_bigg_ids": ["sad"]}, "name": "None", "id": "sad"}, {"notes": {"original_bigg_ids": ["SF2339"]}, "name": "menE", "id": "SF2339"}, {"notes": {"original_bigg_ids": ["SF2340"]}, "name": "menC", "id": "SF2340"}, {"notes": {"original_bigg_ids": ["SF0575"]}, "name": "sdhD", "id": "SF0575"}, {"notes": {"original_bigg_ids": ["SF0574"]}, "name": "sdhA", "id": "SF0574"}, {"notes": {"original_bigg_ids": ["SF0573"]}, "name": "sdhB", "id": "SF0573"}, {"notes": {"original_bigg_ids": ["SF0576"]}, "name": "sdhC", "id": "SF0576"}, {"notes": {"original_bigg_ids": ["SF0569"]}, "name": "sucC", "id": "SF0569"}, {"notes": {"original_bigg_ids": ["SF0568"]}, "name": "sucD", "id": "SF0568"}, {"notes": {"original_bigg_ids": ["SF1572"]}, "name": "uxaB", "id": "SF1572"}, {"notes": {"original_bigg_ids": ["SF0009"]}, "name": "talB", "id": "SF0009"}, {"notes": {"original_bigg_ids": ["SF2506"]}, "name": "talA", "id": "SF2506"}, {"notes": {"original_bigg_ids": ["SF3103"]}, "name": "ttdB", "id": "SF3103"}, {"notes": {"original_bigg_ids": ["SF3102"]}, "name": "ttdA", "id": "SF3102"}, {"notes": {"original_bigg_ids": ["SF3104"]}, "name": "ygjE", "id": "SF3104"}, {"notes": {"original_bigg_ids": ["SF0250"]}, "name": "tauD", "id": "SF0250"}, {"notes": {"original_bigg_ids": ["SF3864"]}, "name": "wecD", "id": "SF3864"}, {"notes": {"original_bigg_ids": ["SF3865"]}, "name": "wecE", "id": "SF3865"}, {"notes": {"original_bigg_ids": ["SF2103"]}, "name": "rfbD", "id": "SF2103"}, {"notes": {"original_bigg_ids": ["SF3862"]}, "name": "rffG", "id": "SF3862"}, {"notes": {"original_bigg_ids": ["SF2104"]}, "name": "rfbB", "id": "SF2104"}, {"notes": {"original_bigg_ids": ["SF0911"]}, "name": "ycaH", "id": "SF0911"}, {"notes": {"original_bigg_ids": ["SF2157"]}, "name": "gatZ", "id": "SF2157"}, {"notes": {"original_bigg_ids": ["SF2158"]}, "name": "gatY", "id": "SF2158"}, {"notes": {"original_bigg_ids": ["SF0156"]}, "name": "dapD", "id": "SF0156"}, {"notes": {"original_bigg_ids": ["SF2523"]}, "name": "bcp", "id": "SF2523"}, {"notes": {"original_bigg_ids": ["SF0062"]}, "name": "yabK", "id": "SF0062"}, {"notes": {"original_bigg_ids": ["SF0063"]}, "name": "tbpA", "id": "SF0063"}, {"notes": {"original_bigg_ids": ["SF0061"]}, "name": "yabJ", "id": "SF0061"}, {"notes": {"original_bigg_ids": ["SF3656"]}, "name": "tdh", "id": "SF3656"}, {"notes": {"original_bigg_ids": ["SF3847"]}, "name": "ilvA", "id": "SF3847"}, {"notes": {"original_bigg_ids": ["SF3157"]}, "name": "tdcB", "id": "SF3157"}, {"notes": {"original_bigg_ids": ["SF1512"]}, "name": "thrS", "id": "SF1512"}, {"notes": {"original_bigg_ids": ["SF3901"]}, "name": "yigJ", "id": "SF3901"}, {"notes": {"original_bigg_ids": ["thiS"]}, "name": "None", "id": "thiS"}, {"notes": {"original_bigg_ids": ["SF4064"]}, "name": "thiF", "id": "SF4064"}, {"notes": {"original_bigg_ids": ["SF4062"]}, "name": "thiH", "id": "SF4062"}, {"notes": {"original_bigg_ids": ["thiI"]}, "name": "None", "id": "thiI"}, {"notes": {"original_bigg_ids": ["SF2507"]}, "name": "tktB", "id": "SF2507"}, {"notes": {"original_bigg_ids": ["SF2837"]}, "name": "thyA", "id": "SF2837"}, {"notes": {"original_bigg_ids": ["SF1110"]}, "name": "ycfN", "id": "SF1110"}, {"notes": {"original_bigg_ids": ["SF0354"]}, "name": "thiL", "id": "SF0354"}, {"notes": {"original_bigg_ids": ["SF4065"]}, "name": "thiE", "id": "SF4065"}, {"notes": {"original_bigg_ids": ["SF3997"]}, "name": "tpiA", "id": "SF3997"}, {"notes": {"original_bigg_ids": ["citG"]}, "name": "None", "id": "citG"}, {"notes": {"original_bigg_ids": ["SF0847"]}, 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"compartment": "c", "id": "nh4_c"}, {"name": "Nicotinamide adenine dinucleotide", "notes": {"original_bigg_ids": ["nad_c"]}, "charge": -1, "formula": "C21H26N7O14P2", "compartment": "c", "id": "nad_c"}, {"name": "Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)", "notes": {"original_bigg_ids": ["murein4p4p_p"]}, "charge": -4, "formula": "C74H114N14O40", "compartment": "p", "id": "murein4p4p_p"}, {"name": "Acetyl-CoA", "notes": {"original_bigg_ids": ["accoa_c"]}, "charge": -4, "formula": "C23H34N7O17P3S", "compartment": "c", "id": "accoa_c"}, {"name": "L-Cysteine", "notes": {"original_bigg_ids": ["cys_DASH_L_c"]}, "charge": 0, "formula": "C3H7NO2S", "compartment": "c", "id": "cys__L_c"}, {"name": "Phosphatidylglycerol (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pg160_p"]}, "charge": -1, "formula": "C38H74O10P1", "compartment": "p", "id": "pg160_p"}, {"name": "L-Aspartate", "notes": {"original_bigg_ids": ["asp_DASH_L_c"]}, "charge": -1, "formula": "C4H6NO4", "compartment": "c", "id": "asp__L_c"}, {"name": "DGTP", "notes": {"original_bigg_ids": ["dgtp_c"]}, "charge": -4, "formula": "C10H12N5O13P3", "compartment": "c", "id": "dgtp_c"}, {"name": "Chloride", "notes": {"original_bigg_ids": ["cl_c"]}, "charge": -1, "formula": "Cl", "compartment": "c", "id": "cl_c"}, {"name": "Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)", "notes": {"original_bigg_ids": ["pe161_p"]}, "charge": 0, "formula": "C37H70N1O8P1", "compartment": "p", "id": "pe161_p"}, {"name": "Succinyl-CoA", "notes": {"original_bigg_ids": ["succoa_c"]}, "charge": -5, "formula": "C25H35N7O19P3S", "compartment": "c", "id": "succoa_c"}, {"name": "Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)", "notes": {"original_bigg_ids": ["murein4px4p_p"]}, "charge": -4, "formula": "C74H112N14O39", "compartment": "p", "id": "murein4px4p_p"}, {"name": "Two disacharide linked murein units, tripeptide crosslinked 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"notes": {"original_bigg_ids": ["fe3_c"]}, "charge": 3, "formula": "Fe", "compartment": "c", "id": "fe3_c"}, {"name": "Diphosphate", "notes": {"original_bigg_ids": ["ppi_c"]}, "charge": -3, "formula": "HO7P2", "compartment": "c", "id": "ppi_c"}, {"name": "Cu2+", "notes": {"original_bigg_ids": ["cu2_c"]}, "charge": 2, "formula": "Cu", "compartment": "c", "id": "cu2_c"}, {"name": "Thiamine diphosphate", "notes": {"original_bigg_ids": ["thmpp_c"]}, "charge": -2, "formula": "C12H16N4O7P2S", "compartment": "c", "id": "thmpp_c"}, {"name": "Nicotinamide adenine dinucleotide - reduced", "notes": {"original_bigg_ids": ["nadh_c"]}, "charge": -2, "formula": "C21H27N7O14P2", "compartment": "c", "id": "nadh_c"}, {"name": "Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)", "notes": {"original_bigg_ids": ["pe181_p"]}, "charge": 0, "formula": "C41H78N1O8P1", "compartment": "p", "id": "pe181_p"}, {"name": "Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)", "notes": {"original_bigg_ids": ["pg161_p"]}, "charge": -1, "formula": "C38H70O10P1", "compartment": "p", "id": "pg161_p"}, {"name": "Glycogen", "notes": {"original_bigg_ids": ["glycogen_c"]}, "charge": 0, "formula": "C6H10O5", "compartment": "c", "id": "glycogen_c"}, {"name": "Heme O", "notes": {"original_bigg_ids": ["hemeO_c"]}, "charge": -2, "formula": "C49H56FeN4O5", "compartment": "c", "id": "hemeO_c"}, {"name": "[4Fe-4S] iron-sulfur cluster", "notes": {"original_bigg_ids": ["4fe4s_c"]}, "charge": 2, "formula": "S4Fe4", "compartment": "c", "id": "4fe4s_c"}, {"name": "Biotin", "notes": {"original_bigg_ids": ["btn_c"]}, "charge": -1, "formula": "C10H15N2O3S", "compartment": "c", "id": "btn_c"}, {"name": "L-Asparagine", "notes": {"original_bigg_ids": ["asn_DASH_L_c"]}, "charge": 0, "formula": "C4H8N2O3", "compartment": "c", "id": "asn__L_c"}, {"name": "Cardiolipin (tetrahexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["clpn160_p"]}, "charge": -2, "formula": "C73H140O17P2", "compartment": "p", "id": "clpn160_p"}, {"name": "Spermidine", "notes": {"original_bigg_ids": ["spmd_c"]}, "charge": 3, "formula": "C7H22N3", "compartment": "c", "id": "spmd_c"}, {"name": "5,10-Methylenetetrahydrofolate", "notes": {"original_bigg_ids": ["mlthf_c"]}, "charge": -2, "formula": "C20H21N7O6", "compartment": "c", "id": "mlthf_c"}, {"name": "UTP", "notes": {"original_bigg_ids": ["utp_c"]}, "charge": -4, "formula": "C9H11N2O15P3", "compartment": "c", "id": "utp_c"}, {"name": "Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pe160_p"]}, "charge": 0, "formula": "C37H74N1O8P1", "compartment": "p", "id": "pe160_p"}, {"name": "Calcium", "notes": {"original_bigg_ids": ["ca2_c"]}, "charge": 2, "formula": "Ca", "compartment": "c", "id": "ca2_c"}, {"name": "L-Threonine", "notes": {"original_bigg_ids": ["thr_DASH_L_c"]}, "charge": 0, "formula": "C4H9NO3", "compartment": "c", "id": "thr__L_c"}, {"name": "L-Methionine", "notes": {"original_bigg_ids": ["met_DASH_L_c"]}, 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"Nicotinamide adenine dinucleotide phosphate", "notes": {"original_bigg_ids": ["nadp_c"]}, "charge": -3, "formula": "C21H25N7O17P3", "compartment": "c", "id": "nadp_c"}, {"name": "Bis-molybdopterin guanine dinucleotide", "notes": {"original_bigg_ids": ["bmocogdp_c"]}, "charge": -4, "formula": "C40H44N20O27P4S4Mo", "compartment": "c", "id": "bmocogdp_c"}, {"name": "10-Formyltetrahydrofolate", "notes": {"original_bigg_ids": ["10fthf_c"]}, "charge": -2, "formula": "C20H21N7O7", "compartment": "c", "id": "10fthf_c"}, {"name": "Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pe160_c"]}, "charge": 0, "formula": "C37H74N1O8P1", "compartment": "c", "id": "pe160_c"}, {"name": "Phosphatidylglycerol (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pg160_c"]}, "charge": -1, "formula": "C38H74O10P1", "compartment": "c", "id": "pg160_c"}, {"name": "Phosphate", "notes": {"original_bigg_ids": ["pi_c"]}, "charge": -2, "formula": "HO4P", "compartment": "c", "id": "pi_c"}, {"name": "Nicotinamide adenine dinucleotide phosphate - reduced", "notes": {"original_bigg_ids": ["nadph_c"]}, "charge": -4, "formula": "C21H26N7O17P3", "compartment": "c", "id": "nadph_c"}, {"name": "Molybdopterin guanine dinucleotide", "notes": {"original_bigg_ids": ["mocogdp_c"]}, "charge": -2, "formula": "C20H22N10O15P2S2Mo", "compartment": "c", "id": "mocogdp_c"}, {"name": "2-Octaprenyl-6-hydroxyphenol", "notes": {"original_bigg_ids": ["2ohph_c"]}, "charge": 0, "formula": "C46H70O2", "compartment": "c", "id": "2ohph_c"}, {"name": "KDO(2)-lipid IV(A)", "notes": {"original_bigg_ids": ["kdo2lipid4_e"]}, "charge": -6, "formula": "C84H148N2O37P2", "compartment": "e", "id": "kdo2lipid4_e"}, {"name": "Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)", "notes": {"original_bigg_ids": ["murein5px4p_p"]}, "charge": -4, "formula": "C77H117N15O40", "compartment": "p", "id": "murein5px4p_p"}, {"name": "(R)-Propane-1,2-diol", "notes": {"original_bigg_ids": ["12ppd_DASH_R_e"]}, "charge": 0, "formula": "C3H8O2", "compartment": "e", "id": "12ppd__R_e"}, {"name": "(S)-Propane-1,2-diol", "notes": {"original_bigg_ids": ["12ppd_DASH_S_e"]}, "charge": 0, "formula": "C3H8O2", "compartment": "e", "id": "12ppd__S_e"}, {"name": "1,4-alpha-D-glucan", "notes": {"original_bigg_ids": ["14glucan_e"]}, "charge": 0, "formula": "C36H62O31", "compartment": "e", "id": "14glucan_e"}, {"name": "1,5-Diaminopentane", "notes": {"original_bigg_ids": ["15dap_e"]}, "charge": 2, "formula": "C5H16N2", "compartment": "e", "id": "15dap_e"}, {"name": "2',3'-Cyclic AMP", "notes": {"original_bigg_ids": ["23camp_e"]}, "charge": -1, "formula": "C10H11N5O6P", "compartment": "e", "id": "23camp_e"}, {"name": "2',3'-Cyclic CMP", "notes": {"original_bigg_ids": ["23ccmp_e"]}, "charge": -1, "formula": "C9H11N3O7P", "compartment": "e", "id": "23ccmp_e"}, {"name": "2',3'-Cyclic GMP", "notes": {"original_bigg_ids": ["23cgmp_e"]}, 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"e", "id": "akg_e"}, {"name": "Beta-Alanine", "notes": {"original_bigg_ids": ["ala_DASH_B_e"]}, "charge": 0, "formula": "C3H7NO2", "compartment": "e", "id": "ala_B_e"}, {"name": "D-Alanine", "notes": {"original_bigg_ids": ["ala_DASH_D_e"]}, "charge": 0, "formula": "C3H7NO2", "compartment": "e", "id": "ala__D_e"}, {"name": "L-Alanine", "notes": {"original_bigg_ids": ["ala_DASH_L_e"]}, "charge": 0, "formula": "C3H7NO2", "compartment": "e", "id": "ala__L_e"}, {"name": "D-Alanyl-D-alanine", "notes": {"original_bigg_ids": ["alaala_e"]}, "charge": 0, "formula": "C6H12N2O3", "compartment": "e", "id": "alaala_e"}, {"name": "D-Allose", "notes": {"original_bigg_ids": ["all_DASH_D_e"]}, "charge": 0, "formula": "C6H12O6", "compartment": "e", "id": "all__D_e"}, {"name": "Allantoin", "notes": {"original_bigg_ids": ["alltn_e"]}, "charge": 0, "formula": "C4H6N4O3", "compartment": "e", "id": "alltn_e"}, {"name": "AMP", "notes": {"original_bigg_ids": ["amp_e"]}, "charge": -2, "formula": "C10H12N5O7P", "compartment": "e", "id": "amp_e"}, {"name": "N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid", "notes": {"original_bigg_ids": ["anhgm_e"]}, "charge": -1, "formula": "C19H29N2O12", "compartment": "e", "id": "anhgm_e"}, {"name": "L-Arabinose", "notes": {"original_bigg_ids": ["arab_DASH_L_e"]}, "charge": 0, "formula": "C5H10O5", "compartment": "e", "id": "arab__L_e"}, {"name": "Arbutin", "notes": {"original_bigg_ids": ["arbt_e"]}, "charge": 0, "formula": "C12H16O7", "compartment": "e", "id": "arbt_e"}, {"name": "Aerobactin minus Fe3", "notes": {"original_bigg_ids": ["arbtn_e"]}, "charge": -3, "formula": "C22H33N4O13", "compartment": "e", "id": "arbtn_e"}, {"name": "Aerobactin", "notes": {"original_bigg_ids": ["arbtn_DASH_fe3_e"]}, "charge": 0, "formula": "C22H33FeN4O13", "compartment": "e", "id": "arbtn_fe3_e"}, {"name": "L-Arginine", "notes": {"original_bigg_ids": ["arg_DASH_L_e"]}, "charge": 1, "formula": "C6H15N4O2", "compartment": "e", "id": "arg__L_e"}, {"name": "L-Ascorbate", 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"Calcium", "notes": {"original_bigg_ids": ["ca2_e"]}, "charge": 2, "formula": "Ca", "compartment": "e", "id": "ca2_e"}, {"name": "Cobinamide", "notes": {"original_bigg_ids": ["cbi_e"]}, "charge": 0, "formula": "C48H72CoN11O8", "compartment": "e", "id": "cbi_e"}, {"name": "Cob(I)alamin", "notes": {"original_bigg_ids": ["cbl1_e"]}, "charge": -1, "formula": "C62H88CoN13O14P", "compartment": "e", "id": "cbl1_e"}, {"name": "Cadmium", "notes": {"original_bigg_ids": ["cd2_e"]}, "charge": 2, "formula": "Cd", "compartment": "e", "id": "cd2_e"}, {"name": "Cys-Gly", "notes": {"original_bigg_ids": ["cgly_e"]}, "charge": 0, "formula": "C5H10N2O3S", "compartment": "e", "id": "cgly_e"}, {"name": "Choline", "notes": {"original_bigg_ids": ["chol_e"]}, "charge": 1, "formula": "C5H14NO", "compartment": "e", "id": "chol_e"}, {"name": "N,N'-diacetylchitobiose", "notes": {"original_bigg_ids": ["chtbs_e"]}, "charge": 0, "formula": "C16H28N2O11", "compartment": "e", "id": "chtbs_e"}, {"name": "Citrate", "notes": {"original_bigg_ids": ["cit_e"]}, "charge": -3, "formula": "C6H5O7", "compartment": "e", "id": "cit_e"}, {"name": "Chloride", "notes": {"original_bigg_ids": ["cl_e"]}, "charge": -1, "formula": "Cl", "compartment": "e", "id": "cl_e"}, {"name": "Chloramphenicol", "notes": {"original_bigg_ids": ["cm_e"]}, "charge": 0, "formula": "C11H12Cl2N2O5", "compartment": "e", "id": "cm_e"}, {"name": "CMP", "notes": {"original_bigg_ids": ["cmp_e"]}, "charge": -2, "formula": "C9H12N3O8P", "compartment": "e", "id": "cmp_e"}, {"name": "CO2", "notes": {"original_bigg_ids": ["co2_e"]}, "charge": 0, "formula": "CO2", "compartment": "e", "id": "co2_e"}, {"name": "Co2+", "notes": {"original_bigg_ids": ["cobalt2_e"]}, "charge": 2, "formula": "Co", "compartment": "e", "id": "cobalt2_e"}, {"name": "Core oligosaccharide lipid A diphosphate", "notes": {"original_bigg_ids": ["colipap_e"]}, "charge": -12, "formula": "C176H303N2O103P5", "compartment": "e", "id": "colipap_e"}, {"name": "Coprogen", "notes": 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{"original_bigg_ids": ["cyan_e"]}, "charge": 0, "formula": "CHN", "compartment": "e", "id": "cyan_e"}, {"name": "Cyanate", "notes": {"original_bigg_ids": ["cynt_e"]}, "charge": -1, "formula": "CNO", "compartment": "e", "id": "cynt_e"}, {"name": "D-Cysteine", "notes": {"original_bigg_ids": ["cys_DASH_D_e"]}, "charge": 0, "formula": "C3H7NO2S", "compartment": "e", "id": "cys__D_e"}, {"name": "L-Cysteine", "notes": {"original_bigg_ids": ["cys_DASH_L_e"]}, "charge": 0, "formula": "C3H7NO2S", "compartment": "e", "id": "cys__L_e"}, {"name": "Cytidine", "notes": {"original_bigg_ids": ["cytd_e"]}, "charge": 0, "formula": "C9H13N3O5", "compartment": "e", "id": "cytd_e"}, {"name": "Deoxyadenosine", "notes": {"original_bigg_ids": ["dad_DASH_2_e"]}, "charge": 0, "formula": "C10H13N5O3", "compartment": "e", "id": "dad_2_e"}, {"name": "DAMP", "notes": {"original_bigg_ids": ["damp_e"]}, "charge": -2, "formula": "C10H12N5O6P", "compartment": "e", "id": "damp_e"}, {"name": "Decanoate (n-C10:0)", "notes": {"original_bigg_ids": ["dca_e"]}, "charge": -1, "formula": "C10H19O2", "compartment": "e", "id": "dca_e"}, {"name": "DCMP", "notes": {"original_bigg_ids": ["dcmp_e"]}, "charge": -2, "formula": "C9H12N3O7P", "compartment": "e", "id": "dcmp_e"}, {"name": "Deoxycytidine", "notes": {"original_bigg_ids": ["dcyt_e"]}, "charge": 0, "formula": "C9H13N3O4", "compartment": "e", "id": "dcyt_e"}, {"name": "Dodecanoate (n-C12:0)", "notes": {"original_bigg_ids": ["ddca_e"]}, "charge": -1, "formula": "C12H23O2", "compartment": "e", "id": "ddca_e"}, {"name": "DGMP", "notes": {"original_bigg_ids": ["dgmp_e"]}, "charge": -2, "formula": "C10H12N5O7P", "compartment": "e", "id": "dgmp_e"}, {"name": "Deoxyguanosine", "notes": {"original_bigg_ids": ["dgsn_e"]}, "charge": 0, "formula": "C10H13N5O4", "compartment": "e", "id": "dgsn_e"}, {"name": "Dihydroxyacetone", "notes": {"original_bigg_ids": ["dha_e"]}, "charge": 0, "formula": "C3H6O3", "compartment": "e", "id": "dha_e"}, {"name": "DIMP", "notes": 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["ethso3_e"]}, "charge": -1, "formula": "C2H5O3S", "compartment": "e", "id": "ethso3_e"}, {"name": "Ethanol", "notes": {"original_bigg_ids": ["etoh_e"]}, "charge": 0, "formula": "C2H6O", "compartment": "e", "id": "etoh_e"}, {"name": "D-Fructose 6-phosphate", "notes": {"original_bigg_ids": ["f6p_e"]}, "charge": -2, "formula": "C6H11O9P", "compartment": "e", "id": "f6p_e"}, {"name": "Formaldehyde", "notes": {"original_bigg_ids": ["fald_e"]}, "charge": 0, "formula": "CH2O", "compartment": "e", "id": "fald_e"}, {"name": "Fe2+", "notes": {"original_bigg_ids": ["fe2_e"]}, "charge": 2, "formula": "Fe", "compartment": "e", "id": "fe2_e"}, {"name": "Fe3+", "notes": {"original_bigg_ids": ["fe3_e"]}, "charge": 3, "formula": "Fe", "compartment": "e", "id": "fe3_e"}, {"name": "Fe(III)dicitrate", "notes": {"original_bigg_ids": ["fe3dcit_e"]}, "charge": -3, "formula": "C12H10FeO14", "compartment": "e", "id": "fe3dcit_e"}, {"name": "Ferric 2,3-dihydroxybenzoylserine", "notes": {"original_bigg_ids": 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"id": "glyc2p_e"}, {"name": "Glycerol 3-phosphate", "notes": {"original_bigg_ids": ["glyc3p_e"]}, "charge": -2, "formula": "C3H7O6P", "compartment": "e", "id": "glyc3p_e"}, {"name": "Glycolate", "notes": {"original_bigg_ids": ["glyclt_e"]}, "charge": -1, "formula": "C2H3O3", "compartment": "e", "id": "glyclt_e"}, {"name": "GMP", "notes": {"original_bigg_ids": ["gmp_e"]}, "charge": -2, "formula": "C10H12N5O8P", "compartment": "e", "id": "gmp_e"}, {"name": "Guanosine", "notes": {"original_bigg_ids": ["gsn_e"]}, "charge": 0, "formula": "C10H13N5O5", "compartment": "e", "id": "gsn_e"}, {"name": "Oxidized glutathione", "notes": {"original_bigg_ids": ["gthox_e"]}, "charge": -2, "formula": "C20H30N6O12S2", "compartment": "e", "id": "gthox_e"}, {"name": "Reduced glutathione", "notes": {"original_bigg_ids": ["gthrd_e"]}, "charge": -1, "formula": "C10H16N3O6S", "compartment": "e", "id": "gthrd_e"}, {"name": "GTP", "notes": {"original_bigg_ids": ["gtp_e"]}, "charge": -4, "formula": 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"id": "mal__L_e"}, {"name": "Maltose", "notes": {"original_bigg_ids": ["malt_e"]}, "charge": 0, "formula": "C12H22O11", "compartment": "e", "id": "malt_e"}, {"name": "Maltohexaose", "notes": {"original_bigg_ids": ["malthx_e"]}, "charge": 0, "formula": "C36H62O31", "compartment": "e", "id": "malthx_e"}, {"name": "Maltopentaose", "notes": {"original_bigg_ids": ["maltpt_e"]}, "charge": 0, "formula": "C30H52O26", "compartment": "e", "id": "maltpt_e"}, {"name": "Maltotriose", "notes": {"original_bigg_ids": ["malttr_e"]}, "charge": 0, "formula": "C18H32O16", "compartment": "e", "id": "malttr_e"}, {"name": "Maltotetraose", "notes": {"original_bigg_ids": ["maltttr_e"]}, "charge": 0, "formula": "C24H42O21", "compartment": "e", "id": "maltttr_e"}, {"name": "D-Mannose", "notes": {"original_bigg_ids": ["man_e"]}, "charge": 0, "formula": "C6H12O6", "compartment": "e", "id": "man_e"}, {"name": "D-Mannose 6-phosphate", "notes": {"original_bigg_ids": ["man6p_e"]}, "charge": -2, "formula": "C6H11O9P", 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(n-C16:0)", "notes": {"original_bigg_ids": ["2agpe160_p"]}, "charge": 0, "formula": "C21H44NO7P1", "compartment": "p", "id": "2agpe160_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)", "notes": {"original_bigg_ids": ["2agpe161_p"]}, "charge": 0, "formula": "C21H42NO7P1", "compartment": "p", "id": "2agpe161_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)", "notes": {"original_bigg_ids": ["2agpe161_c"]}, "charge": 0, "formula": "C21H42NO7P1", "compartment": "c", "id": "2agpe161_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)", "notes": {"original_bigg_ids": ["2agpe180_c"]}, "charge": 0, "formula": "C23H48NO7P1", "compartment": "c", "id": "2agpe180_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)", "notes": {"original_bigg_ids": ["2agpe180_p"]}, "charge": 0, "formula": "C23H48NO7P1", "compartment": "p", "id": "2agpe180_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)", "notes": {"original_bigg_ids": ["2agpe181_p"]}, "charge": 0, "formula": "C23H46NO7P1", "compartment": "p", "id": "2agpe181_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)", "notes": {"original_bigg_ids": ["2agpe181_c"]}, "charge": 0, "formula": "C23H46NO7P1", "compartment": "c", "id": "2agpe181_c"}, {"name": "Dodecanoate (n-C12:0)", "notes": {"original_bigg_ids": ["ddca_c"]}, "charge": -1, "formula": "C12H23O2", "compartment": "c", "id": "ddca_c"}, {"name": "Phosphatidylethanolamine (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pe120_c"]}, "charge": 0, "formula": "C29H58N1O8P1", "compartment": "c", "id": "pe120_c"}, {"name": "AMP", "notes": {"original_bigg_ids": ["amp_c"]}, "charge": -2, "formula": "C10H12N5O7P", "compartment": "c", "id": "amp_c"}, {"name": "Tetradecanoate (n-C14:0)", "notes": {"original_bigg_ids": ["ttdca_c"]}, "charge": -1, "formula": "C14H27O2", "compartment": "c", "id": "ttdca_c"}, {"name": "Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pe140_c"]}, "charge": 0, "formula": "C33H66N1O8P1", "compartment": "c", "id": "pe140_c"}, {"name": "Phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pe141_c"]}, "charge": 0, "formula": "C33H62N1O8P1", "compartment": "c", "id": "pe141_c"}, {"name": "Tetradecenoate (n-C14:1)", "notes": {"original_bigg_ids": ["ttdcea_c"]}, "charge": -1, "formula": "C14H25O2", "compartment": "c", "id": "ttdcea_c"}, {"name": "Hexadecanoate (n-C16:0)", "notes": {"original_bigg_ids": ["hdca_c"]}, "charge": -1, "formula": "C16H31O2", "compartment": "c", "id": "hdca_c"}, {"name": "Hexadecenoate (n-C16:1)", "notes": {"original_bigg_ids": ["hdcea_c"]}, "charge": -1, "formula": "C16H29O2", "compartment": "c", "id": "hdcea_c"}, {"name": "Octadecanoate (n-C18:0)", "notes": {"original_bigg_ids": ["ocdca_c"]}, "charge": -1, "formula": "C18H35O2", "compartment": "c", "id": "ocdca_c"}, {"name": "Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pe180_c"]}, "charge": 0, "formula": "C41H82N1O8P1", "compartment": "c", "id": "pe180_c"}, {"name": "Octadecenoate (n-C18:1)", "notes": {"original_bigg_ids": ["ocdcea_c"]}, "charge": -1, "formula": "C18H33O2", "compartment": "c", "id": "ocdcea_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)", "notes": {"original_bigg_ids": ["2agpg120_c"]}, "charge": -1, "formula": "C18H36O9P1", "compartment": "c", "id": "2agpg120_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)", "notes": {"original_bigg_ids": ["2agpg120_p"]}, "charge": -1, "formula": "C18H36O9P1", "compartment": "p", "id": "2agpg120_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)", "notes": {"original_bigg_ids": ["2agpg140_p"]}, "charge": -1, "formula": "C20H40O9P1", "compartment": "p", "id": "2agpg140_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)", "notes": {"original_bigg_ids": ["2agpg140_c"]}, "charge": -1, "formula": "C20H40O9P1", "compartment": "c", "id": "2agpg140_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)", "notes": {"original_bigg_ids": ["2agpg141_c"]}, "charge": -1, "formula": "C20H38O9P1", "compartment": "c", "id": "2agpg141_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)", "notes": {"original_bigg_ids": ["2agpg141_p"]}, "charge": -1, "formula": "C20H38O9P1", "compartment": "p", "id": "2agpg141_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)", "notes": {"original_bigg_ids": ["2agpg160_c"]}, "charge": -1, "formula": "C22H44O9P1", "compartment": "c", "id": "2agpg160_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)", "notes": {"original_bigg_ids": ["2agpg160_p"]}, "charge": -1, "formula": "C22H44O9P1", "compartment": "p", "id": "2agpg160_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)", "notes": {"original_bigg_ids": ["2agpg161_c"]}, "charge": -1, "formula": "C22H42O9P1", "compartment": "c", "id": "2agpg161_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)", "notes": {"original_bigg_ids": ["2agpg161_p"]}, "charge": -1, "formula": "C22H42O9P1", "compartment": "p", "id": "2agpg161_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)", "notes": {"original_bigg_ids": ["2agpg180_c"]}, "charge": -1, "formula": "C24H48O9P1", "compartment": "c", "id": "2agpg180_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)", "notes": {"original_bigg_ids": ["2agpg180_p"]}, "charge": -1, "formula": "C24H48O9P1", "compartment": "p", "id": "2agpg180_p"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)", "notes": {"original_bigg_ids": ["2agpg181_c"]}, "charge": -1, "formula": "C24H46O9P1", "compartment": "c", "id": "2agpg181_c"}, {"name": "2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)", "notes": {"original_bigg_ids": ["2agpg181_p"]}, "charge": -1, "formula": "C24H46O9P1", "compartment": "p", "id": "2agpg181_p"}, {"name": "Phosphatidylglycerol (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pg120_c"]}, "charge": -1, "formula": "C30H58O10P1", "compartment": "c", "id": "pg120_c"}, {"name": "Phosphatidylglycerol (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pg140_c"]}, "charge": -1, "formula": "C34H66O10P1", "compartment": "c", "id": "pg140_c"}, {"name": "Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pg141_c"]}, "charge": -1, "formula": "C34H62O10P1", "compartment": "c", "id": "pg141_c"}, {"name": "Phosphatidylglycerol (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pg180_c"]}, "charge": -1, "formula": "C42H82O10P1", "compartment": "c", "id": "pg180_c"}, {"name": "2-Dehydro-L-gulonate", "notes": {"original_bigg_ids": ["2dhguln_c"]}, "charge": -1, "formula": "C6H9O7", "compartment": "c", "id": "2dhguln_c"}, {"name": "D-Gluconate", "notes": {"original_bigg_ids": ["glcn_c"]}, "charge": -1, "formula": "C6H11O7", "compartment": "c", "id": "glcn_c"}, {"name": "L-Idonate", "notes": {"original_bigg_ids": ["idon_DASH_L_c"]}, "charge": -1, "formula": "C6H11O7", "compartment": "c", "id": "idon__L_c"}, {"name": "4-Amino-2-methyl-5-phosphomethylpyrimidine", "notes": {"original_bigg_ids": ["4ampm_c"]}, "charge": -2, "formula": "C6H8N3O4P", "compartment": "c", "id": "4ampm_c"}, {"name": "2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate", "notes": {"original_bigg_ids": ["2mahmp_c"]}, "charge": -3, "formula": "C6H8N3O7P2", "compartment": "c", "id": "2mahmp_c"}, {"name": "3,4-Dihydroxyphenylacetaldehyde", "notes": {"original_bigg_ids": ["34dhpac_p"]}, "charge": 0, "formula": "C8H8O3", "compartment": "p", "id": "34dhpac_p"}, {"name": "3-Aminoacrylate", "notes": {"original_bigg_ids": ["3amac_c"]}, "charge": -1, "formula": "C3H4NO2", "compartment": "c", "id": "3amac_c"}, {"name": "Malonate semialdehyde", "notes": {"original_bigg_ids": ["msa_c"]}, "charge": -1, "formula": "C3H3O3", "compartment": "c", "id": "msa_c"}, {"name": "(R)-3-Hydroxydecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hdecACP_c"]}, "charge": -1, "formula": "C21H39N2O9PRS", "compartment": "c", "id": "3hdecACP_c"}, {"name": "Trans-Dec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tdec2eACP_c"]}, "charge": -1, "formula": "C21H37N2O8PRS", "compartment": "c", "id": "tdec2eACP_c"}, {"name": "Trans-Dodec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tddec2eACP_c"]}, "charge": -1, "formula": "C23H41N2O8PRS", "compartment": "c", "id": "tddec2eACP_c"}, {"name": "(R)-3-Hydroxydodecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hddecACP_c"]}, "charge": -1, "formula": "C23H43N2O9PRS", "compartment": "c", "id": "3hddecACP_c"}, {"name": "(R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcddec5eACP_c"]}, "charge": -1, "formula": "C23H41N2O9PRS", "compartment": "c", "id": "3hcddec5eACP_c"}, {"name": "Trans-3-cis-5-dodecenoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c5ddeceACP_c"]}, "charge": -1, "formula": "C23H39N2O8PRS", "compartment": "c", "id": "t3c5ddeceACP_c"}, {"name": "(R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hmrsACP_c"]}, "charge": -1, "formula": "C25H47N2O9PRS", "compartment": "c", "id": "3hmrsACP_c"}, {"name": "Trans-Tetradec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tmrs2eACP_c"]}, "charge": -1, "formula": "C25H45N2O8PRS", "compartment": "c", "id": "tmrs2eACP_c"}, {"name": "(R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcmrs7eACP_c"]}, "charge": -1, "formula": "C25H45N2O9PRS", "compartment": "c", "id": "3hcmrs7eACP_c"}, {"name": "Trans-3-cis-7-myristoleoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c7mrseACP_c"]}, "charge": -1, "formula": "C25H43N2O8PRS", "compartment": "c", "id": "t3c7mrseACP_c"}, {"name": "Trans-Hexadec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["tpalm2eACP_c"]}, "charge": -1, "formula": "C27H49N2O8PRS", "compartment": "c", "id": "tpalm2eACP_c"}, {"name": "R-3-hydroxypalmitoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hpalmACP_c"]}, "charge": -1, "formula": "C27H51N2O9PRS", "compartment": "c", "id": "3hpalmACP_c"}, {"name": "(R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcpalm9eACP_c"]}, "charge": -1, "formula": "C27H49N2O9PRS", "compartment": "c", "id": "3hcpalm9eACP_c"}, {"name": "Trans-3-cis-9-palmitoleoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c9palmeACP_c"]}, "charge": -1, "formula": "C27H47N2O8PRS", "compartment": "c", "id": "t3c9palmeACP_c"}, {"name": "(R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hoctaACP_c"]}, "charge": -1, "formula": "C29H55N2O9PRS", "compartment": "c", "id": "3hoctaACP_c"}, {"name": "Trans-octadec-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["toctd2eACP_c"]}, "charge": -1, "formula": "C29H53N2O8PRS", "compartment": "c", "id": "toctd2eACP_c"}, {"name": "(R)-3-hydroxy-cis-vacc-11-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hcvac11eACP_c"]}, "charge": -1, "formula": "C29H53N2O9PRS", "compartment": "c", "id": "3hcvac11eACP_c"}, {"name": "Trans-3-cis-11-vacceoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["t3c11vaceACP_c"]}, "charge": -1, "formula": "C29H51N2O8PRS", "compartment": "c", "id": "t3c11vaceACP_c"}, {"name": "But-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["but2eACP_c"]}, "charge": -1, "formula": "C15H25N2O8PRS", "compartment": "c", "id": "but2eACP_c"}, {"name": "(3R)-3-Hydroxyacyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3haACP_c"]}, "charge": -1, "formula": "C15H27N2O9PRS", "compartment": "c", "id": "3haACP_c"}, {"name": "Trans-Hex-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["thex2eACP_c"]}, "charge": -1, "formula": "C17H29N2O8PRS", "compartment": "c", "id": "thex2eACP_c"}, {"name": "(R)-3-Hydroxyhexanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hhexACP_c"]}, "charge": -1, "formula": "C17H31N2O9PRS", "compartment": "c", "id": "3hhexACP_c"}, {"name": "(R)-3-Hydroxyoctanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3hoctACP_c"]}, "charge": -1, "formula": "C19H35N2O9PRS", "compartment": "c", "id": "3hoctACP_c"}, {"name": "Trans-Oct-2-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["toct2eACP_c"]}, "charge": -1, "formula": "C19H33N2O8PRS", "compartment": "c", "id": "toct2eACP_c"}, {"name": "3-Hydroxypropanoate", "notes": {"original_bigg_ids": ["3hpp_p"]}, "charge": -1, "formula": "C3H5O3", "compartment": "p", "id": "3hpp_p"}, {"name": "3-Hydroxypropanoate", "notes": {"original_bigg_ids": ["3hpp_c"]}, "charge": -1, "formula": "C3H5O3", "compartment": "c", "id": "3hpp_c"}, {"name": "Uridine", "notes": {"original_bigg_ids": ["uri_p"]}, "charge": 0, "formula": "C9H12N2O6", "compartment": "p", "id": "uri_p"}, {"name": "Phosphate", "notes": {"original_bigg_ids": ["pi_p"]}, "charge": -2, "formula": "HO4P", "compartment": "p", "id": "pi_p"}, {"name": "Cytidine", "notes": {"original_bigg_ids": ["cytd_p"]}, "charge": 0, "formula": "C9H13N3O5", "compartment": "p", "id": "cytd_p"}, {"name": "Adenosine", "notes": {"original_bigg_ids": ["adn_p"]}, "charge": 0, "formula": "C10H13N5O4", "compartment": "p", "id": "adn_p"}, {"name": "Guanosine", "notes": {"original_bigg_ids": ["gsn_p"]}, "charge": 0, "formula": "C10H13N5O5", "compartment": "p", "id": "gsn_p"}, {"name": "3-Oxodecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3odecACP_c"]}, "charge": -1, "formula": "C21H37N2O9PRS", "compartment": "c", "id": "3odecACP_c"}, {"name": "3-Oxododecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3oddecACP_c"]}, "charge": -1, "formula": "C23H41N2O9PRS", "compartment": "c", "id": "3oddecACP_c"}, {"name": "3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocddec5eACP_c"]}, "charge": -1, "formula": "C23H39N2O9PRS", "compartment": "c", "id": "3ocddec5eACP_c"}, {"name": "3-Oxotetradecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3omrsACP_c"]}, "charge": -1, "formula": "C25H45N2O9PRS", "compartment": "c", "id": "3omrsACP_c"}, {"name": "3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocmrs7eACP_c"]}, "charge": -1, "formula": "C25H43N2O9PRS", "compartment": "c", "id": "3ocmrs7eACP_c"}, {"name": "3-Oxohexadecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3opalmACP_c"]}, "charge": -1, "formula": "C27H49N2O9PRS", "compartment": "c", "id": "3opalmACP_c"}, {"name": "3-oxo-cis-palm-9-eoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocpalm9eACP_c"]}, "charge": -1, "formula": "C27H47N2O9PRS", "compartment": "c", "id": "3ocpalm9eACP_c"}, {"name": "3-Oxooctadecanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ooctdACP_c"]}, "charge": -1, "formula": "C29H53N2O9PRS", "compartment": "c", "id": "3ooctdACP_c"}, {"name": "3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ocvac11eACP_c"]}, "charge": -1, "formula": "C29H51N2O9PRS", "compartment": "c", "id": "3ocvac11eACP_c"}, {"name": "Acetoacetyl-ACP", "notes": {"original_bigg_ids": ["actACP_c"]}, "charge": -1, "formula": "C15H25N2O9PRS", "compartment": "c", "id": "actACP_c"}, {"name": "3-Oxohexanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ohexACP_c"]}, "charge": -1, "formula": "C17H29N2O9PRS", "compartment": "c", "id": "3ohexACP_c"}, {"name": "3-Oxooctanoyl-[acyl-carrier protein]", "notes": {"original_bigg_ids": ["3ooctACP_c"]}, "charge": -1, "formula": "C19H33N2O9PRS", "compartment": "c", "id": "3ooctACP_c"}, {"name": "Octanoyl-ACP (n-C8:0ACP)", "notes": {"original_bigg_ids": ["ocACP_c"]}, "charge": -1, "formula": "C19H35N2O8PRS", "compartment": "c", "id": "ocACP_c"}, {"name": "Malonyl-[acyl-carrier protein]", "notes": 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"butACP_c"}, {"name": "Hexanoyl-ACP (n-C6:0ACP)", "notes": {"original_bigg_ids": ["hexACP_c"]}, "charge": -1, "formula": "C17H31N2O8PRS", "compartment": "c", "id": "hexACP_c"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate", "notes": {"original_bigg_ids": ["LalaDgluMdap_c"]}, "charge": -1, "formula": "C15H25N4O8", "compartment": "c", "id": "LalaDgluMdap_c"}, {"name": "L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate", "notes": {"original_bigg_ids": ["LalaDgluMdap_p"]}, "charge": -1, "formula": "C15H25N4O8", "compartment": "p", "id": "LalaDgluMdap_p"}, {"name": "4-Hydroxyphenylacetaldehyde", "notes": {"original_bigg_ids": ["4hoxpacd_p"]}, "charge": 0, "formula": "C8H8O2", "compartment": "p", "id": "4hoxpacd_p"}, {"name": "4-Hydroxy-L-threonine", "notes": {"original_bigg_ids": ["4hthr_c"]}, "charge": 0, "formula": "C4H9NO4", "compartment": "c", "id": "4hthr_c"}, {"name": "O-Phospho-4-hydroxy-L-threonine", "notes": {"original_bigg_ids": ["phthr_c"]}, "charge": -2, 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["ade_c"]}, "charge": 0, "formula": "C5H5N5", "compartment": "c", "id": "ade_c"}, {"name": "5'-Deoxyadenosine", "notes": {"original_bigg_ids": ["dad_DASH_5_c"]}, "charge": 0, "formula": "C10H13N5O3", "compartment": "c", "id": "dad_5_c"}, {"name": "5-Methylthio-D-ribose", "notes": {"original_bigg_ids": ["5mtr_p"]}, "charge": 0, "formula": "C6H12O4S", "compartment": "p", "id": "5mtr_p"}, {"name": "5-Methylthio-D-ribose", "notes": {"original_bigg_ids": ["5mtr_c"]}, "charge": 0, "formula": "C6H12O4S", "compartment": "c", "id": "5mtr_c"}, {"name": "D-Ribulose 5-phosphate", "notes": {"original_bigg_ids": ["ru5p_DASH_D_c"]}, "charge": -2, "formula": "C5H9O8P", "compartment": "c", "id": "ru5p__D_c"}, {"name": "D-Arabinose 5-phosphate", "notes": {"original_bigg_ids": ["ara5p_c"]}, "charge": -2, "formula": "C5H9O8P", "compartment": "c", "id": "ara5p_c"}, {"name": "Cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1)", "notes": {"original_bigg_ids": ["octeACP_c"]}, "charge": -1, "formula": "C29H53N2O8PRS", "compartment": "c", "id": "octeACP_c"}, {"name": "Octadecanoyl-ACP (n-C18:0ACP)", "notes": {"original_bigg_ids": ["ocdcaACP_c"]}, "charge": -1, "formula": "C29H55N2O8PRS", "compartment": "c", "id": "ocdcaACP_c"}, {"name": "Decanoate (n-C10:0)", "notes": {"original_bigg_ids": ["dca_c"]}, "charge": -1, "formula": "C10H19O2", "compartment": "c", "id": "dca_c"}, {"name": "Octanoate (n-C8:0)", "notes": {"original_bigg_ids": ["octa_c"]}, "charge": -1, "formula": "C8H15O2", "compartment": "c", "id": "octa_c"}, {"name": "Aminoacetone", "notes": {"original_bigg_ids": ["aact_c"]}, "charge": 1, "formula": "C3H8NO", "compartment": "c", "id": "aact_c"}, {"name": "Methylglyoxal", "notes": {"original_bigg_ids": ["mthgxl_c"]}, "charge": 0, "formula": "C3H4O2", "compartment": "c", "id": "mthgxl_c"}, {"name": "Hydrogen peroxide", "notes": {"original_bigg_ids": ["h2o2_c"]}, "charge": 0, "formula": "H2O2", "compartment": "c", "id": "h2o2_c"}, {"name": "O2", "notes": {"original_bigg_ids": 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"formula": "R", "compartment": "c", "id": "trnalys_c"}, {"name": "L-Lyxose", "notes": {"original_bigg_ids": ["lyx_DASH_L_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "lyx__L_c"}, {"name": "L-Xylulose", "notes": {"original_bigg_ids": ["xylu_DASH_L_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "xylu__L_c"}, {"name": "L-Lyxose", "notes": {"original_bigg_ids": ["lyx_DASH_L_p"]}, "charge": 0, "formula": "C5H10O5", "compartment": "p", "id": "lyx__L_p"}, {"name": "D-Mannitol 1-phosphate", "notes": {"original_bigg_ids": ["mnl1p_c"]}, "charge": -2, "formula": "C6H13O9P", "compartment": "c", "id": "mnl1p_c"}, {"name": "Malonyl-CoA methyl ester", "notes": {"original_bigg_ids": ["malcoame_c"]}, "charge": -4, "formula": "C25H36N7O19P3S", "compartment": "c", "id": "malcoame_c"}, {"name": "D-Malate", "notes": {"original_bigg_ids": ["mal_DASH_D_p"]}, "charge": -2, "formula": "C4H4O5", "compartment": "p", "id": "mal__D_p"}, {"name": "D-Malate", "notes": 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"malt6p_c"}, {"name": "L-Malate", "notes": {"original_bigg_ids": ["mal_DASH_L_p"]}, "charge": -2, "formula": "C4H4O5", "compartment": "p", "id": "mal__L_p"}, {"name": "D-Mannose 6-phosphate", "notes": {"original_bigg_ids": ["man6p_p"]}, "charge": -2, "formula": "C6H11O9P", "compartment": "p", "id": "man6p_p"}, {"name": "D-Mannonate", "notes": {"original_bigg_ids": ["mana_c"]}, "charge": -1, "formula": "C6H11O7", "compartment": "c", "id": "mana_c"}, {"name": "2(alpha-D-Mannosyl-6-phosphate)-D-glycerate", "notes": {"original_bigg_ids": ["man6pglyc_c"]}, "charge": -3, "formula": "C9H14O12P", "compartment": "c", "id": "man6pglyc_c"}, {"name": "2(alpha-D-Mannosyl)-D-glycerate", "notes": {"original_bigg_ids": ["manglyc_p"]}, "charge": -1, "formula": "C9H15O9", "compartment": "p", "id": "manglyc_p"}, {"name": "D-Mannose", "notes": {"original_bigg_ids": ["man_p"]}, "charge": 0, "formula": "C6H12O6", "compartment": "p", "id": "man_p"}, {"name": "Two linked disacharide pentapeptide murein units 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"N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole", "notes": {"original_bigg_ids": ["5prdmbz_c"]}, "charge": -2, "formula": "C14H17N2O7P", "compartment": "c", "id": "5prdmbz_c"}, {"name": "5,6-Dimethylbenzimidazole", "notes": {"original_bigg_ids": ["dmbzid_c"]}, "charge": 0, "formula": "C9H10N2", "compartment": "c", "id": "dmbzid_c"}, {"name": "Quinolinate", "notes": {"original_bigg_ids": ["quln_c"]}, "charge": -2, "formula": "C7H3NO4", "compartment": "c", "id": "quln_c"}, {"name": "Nitrite", "notes": {"original_bigg_ids": ["no2_p"]}, "charge": -1, "formula": "NO2", "compartment": "p", "id": "no2_p"}, {"name": "Nitrite", "notes": {"original_bigg_ids": ["no2_c"]}, "charge": -1, "formula": "NO2", "compartment": "c", "id": "no2_c"}, {"name": "Nitrate", "notes": {"original_bigg_ids": ["no3_p"]}, "charge": -1, "formula": "NO3", "compartment": "p", "id": "no3_p"}, {"name": "Nitrate", "notes": {"original_bigg_ids": ["no3_c"]}, "charge": -1, "formula": "NO3", "compartment": "c", "id": "no3_c"}, {"name": "Novobiocin", "notes": {"original_bigg_ids": ["novbcn_p"]}, "charge": 0, "formula": "C31H36N2O11", "compartment": "p", "id": "novbcn_p"}, {"name": "Nitric oxide", "notes": {"original_bigg_ids": ["no_p"]}, "charge": 0, "formula": "NO", "compartment": "p", "id": "no_p"}, {"name": "Xanthosine", "notes": {"original_bigg_ids": ["xtsn_c"]}, "charge": 0, "formula": "C10H12N4O6", "compartment": "c", "id": "xtsn_c"}, {"name": "Xanthosine 5'-phosphate", "notes": {"original_bigg_ids": ["xmp_p"]}, "charge": -2, "formula": "C10H11N4O9P", "compartment": "p", "id": "xmp_p"}, {"name": "Xanthosine", "notes": {"original_bigg_ids": ["xtsn_p"]}, "charge": 0, "formula": "C10H12N4O6", "compartment": "p", "id": "xtsn_p"}, {"name": "DIMP", "notes": {"original_bigg_ids": ["dimp_c"]}, "charge": -2, "formula": "C10H11N4O7P", "compartment": "c", "id": "dimp_c"}, {"name": "UMP", "notes": {"original_bigg_ids": ["ump_p"]}, "charge": -2, "formula": "C9H11N2O9P", "compartment": "p", "id": "ump_p"}, {"name": "Thymidine", "notes": {"original_bigg_ids": ["thymd_c"]}, "charge": 0, "formula": "C10H14N2O5", "compartment": "c", "id": "thymd_c"}, {"name": "Thymidine", "notes": {"original_bigg_ids": ["thymd_p"]}, "charge": 0, "formula": "C10H14N2O5", "compartment": "p", "id": "thymd_p"}, {"name": "(O16 antigen)x4 core oligosaccharide lipid A", "notes": {"original_bigg_ids": ["o16a4colipa_p"]}, "charge": -11, "formula": "C312H523N6O200P4", "compartment": "p", "id": "o16a4colipa_p"}, {"name": "O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["aragund_c"]}, "charge": -2, "formula": "C71H115N1O17P2", "compartment": "c", "id": "aragund_c"}, {"name": "Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["ragund_c"]}, "charge": -2, "formula": "C69H113N1O16P2", "compartment": "c", "id": "ragund_c"}, {"name": "O16 antigen undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["o16aund_c"]}, "charge": -2, "formula": "C89H145N1O32P2", "compartment": "c", "id": "o16aund_c"}, {"name": "Galactofuranosyl-glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate", "notes": {"original_bigg_ids": ["gfgaragund_c"]}, "charge": -2, "formula": "C83H135N1O27P2", "compartment": "c", "id": "gfgaragund_c"}, {"name": "Superoxide anion", "notes": {"original_bigg_ids": ["o2s_p"]}, "charge": -1, "formula": "O2", "compartment": "p", "id": "o2s_p"}, {"name": "3-Hydroxyglutaryl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["hgmeACP_c"]}, "charge": -1, "formula": "C17H29N2O11PRS", "compartment": "c", "id": "hgmeACP_c"}, {"name": "3-Oxo-glutaryl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["ogmeACP_c"]}, "charge": -1, "formula": "C17H27N2O11PRS", "compartment": "c", "id": "ogmeACP_c"}, {"name": "2-Oxo-3-hydroxy-4-phosphobutanoate", "notes": {"original_bigg_ids": ["ohpb_c"]}, "charge": -3, "formula": "C4H4O8P", "compartment": "c", "id": "ohpb_c"}, {"name": "2-Octaprenyl-6-methoxyphenol", "notes": {"original_bigg_ids": ["2omph_c"]}, "charge": 0, "formula": "C47H72O2", "compartment": "c", "id": "2omph_c"}, {"name": "2-Octaprenyl-3-methyl-6-methoxy- 1,4-benzoquinol", "notes": {"original_bigg_ids": ["2ommbl_c"]}, "charge": 0, "formula": "C48H74O3", "compartment": "c", "id": "2ommbl_c"}, {"name": "2-Octaprenyl-6-methoxy-1,4-benzoquinol", "notes": {"original_bigg_ids": ["2ombzl_c"]}, "charge": 0, "formula": "C47H72O3", "compartment": "c", "id": "2ombzl_c"}, {"name": "Orotidine 5'-phosphate", "notes": {"original_bigg_ids": ["orot5p_c"]}, "charge": -3, "formula": "C10H10N2O11P", "compartment": "c", "id": "orot5p_c"}, {"name": "2-Octaprenylphenol", "notes": {"original_bigg_ids": ["2oph_c"]}, "charge": 0, "formula": "C46H70O", "compartment": "c", "id": "2oph_c"}, {"name": "3-Hydroxypimeloyl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["hpmeACP_c"]}, "charge": -1, "formula": "C19H33N2O11PRS", "compartment": "c", "id": "hpmeACP_c"}, {"name": "3-Oxo-pimeloyl-[acyl-carrier protein] methyl ester", "notes": {"original_bigg_ids": ["opmeACP_c"]}, "charge": -1, "formula": "C19H31N2O11PRS", "compartment": "c", "id": "opmeACP_c"}, {"name": "Orotate", "notes": {"original_bigg_ids": ["orot_p"]}, "charge": -1, "formula": "C5H3N2O4", "compartment": "p", "id": "orot_p"}, {"name": "Oxalureate", "notes": {"original_bigg_ids": ["oxur_c"]}, "charge": -1, "formula": "C3H3N2O4", "compartment": "c", "id": "oxur_c"}, {"name": "Phenylacetaldehyde", "notes": {"original_bigg_ids": ["pacald_p"]}, "charge": 0, "formula": "C8H8O", "compartment": "p", "id": "pacald_p"}, {"name": "Phenylacetaldehyde", "notes": {"original_bigg_ids": ["pacald_c"]}, "charge": 0, "formula": "C8H8O", "compartment": "c", "id": "pacald_c"}, {"name": "(R)-Pantothenate", "notes": {"original_bigg_ids": ["pnto_DASH_R_c"]}, "charge": -1, "formula": "C9H16NO5", "compartment": "c", "id": "pnto__R_c"}, {"name": "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine", "notes": {"original_bigg_ids": ["ugmda_c"]}, "charge": -4, "formula": "C41H61N9O28P2", "compartment": "c", "id": "ugmda_c"}, {"name": "Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine", "notes": {"original_bigg_ids": ["uagmda_c"]}, "charge": -4, "formula": "C87H139N7O23P2", "compartment": "c", "id": "uagmda_c"}, {"name": "Pyridoxine 5'-phosphate", "notes": {"original_bigg_ids": ["pdx5p_c"]}, "charge": -2, "formula": "C8H10NO6P", "compartment": "c", "id": "pdx5p_c"}, {"name": "Pyridoxine", "notes": {"original_bigg_ids": ["pydxn_c"]}, "charge": 0, "formula": "C8H11NO3", "compartment": "c", "id": "pydxn_c"}, {"name": "Phosphatidylethanolamine (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pe120_p"]}, "charge": 0, "formula": "C29H58N1O8P1", "compartment": "p", "id": "pe120_p"}, {"name": "Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pe140_p"]}, "charge": 0, "formula": "C33H66N1O8P1", "compartment": "p", "id": "pe140_p"}, {"name": "Phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pe141_p"]}, "charge": 0, "formula": "C33H62N1O8P1", "compartment": "p", "id": "pe141_p"}, {"name": "Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pe180_p"]}, "charge": 0, "formula": "C41H82N1O8P1", "compartment": "p", "id": "pe180_p"}, {"name": "Phenethylamine", "notes": {"original_bigg_ids": ["peamn_p"]}, "charge": 1, "formula": "C8H12N", "compartment": "p", "id": "peamn_p"}, {"name": "D-Tagatose 1,6-biphosphate", "notes": {"original_bigg_ids": ["tagdp_DASH_D_c"]}, "charge": -4, "formula": "C6H10O12P2", "compartment": "c", "id": "tagdp__D_c"}, {"name": "Sedoheptulose 7-phosphate", "notes": {"original_bigg_ids": ["s7p_c"]}, "charge": -2, "formula": "C7H13O10P", "compartment": "c", "id": "s7p_c"}, {"name": "3-Phosphohydroxypyruvate", "notes": {"original_bigg_ids": ["3php_c"]}, "charge": -3, "formula": "C3H2O7P", "compartment": "c", "id": "3php_c"}, {"name": "3-Phospho-D-glycerate", "notes": {"original_bigg_ids": ["3pg_c"]}, "charge": -3, "formula": "C3H4O7P", "compartment": "c", "id": "3pg_c"}, {"name": "2-Phosphoglycolate", "notes": {"original_bigg_ids": ["2pglyc_c"]}, "charge": -3, "formula": "C2H2O6P", "compartment": "c", "id": "2pglyc_c"}, {"name": "Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pgp120_p"]}, "charge": -3, "formula": "C30H57O13P2", "compartment": "p", "id": "pgp120_p"}, {"name": "Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)", "notes": {"original_bigg_ids": ["pgp120_c"]}, "charge": -3, "formula": "C30H57O13P2", "compartment": "c", "id": "pgp120_c"}, {"name": "Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pgp140_c"]}, "charge": -3, "formula": "C34H65O13P2", "compartment": "c", "id": "pgp140_c"}, {"name": "Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)", "notes": {"original_bigg_ids": ["pgp140_p"]}, "charge": -3, "formula": "C34H65O13P2", "compartment": "p", "id": "pgp140_p"}, {"name": "Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pgp141_c"]}, "charge": -3, "formula": "C34H61O13P2", "compartment": "c", "id": "pgp141_c"}, {"name": "Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)", "notes": {"original_bigg_ids": ["pgp141_p"]}, "charge": -3, "formula": "C34H61O13P2", "compartment": "p", "id": "pgp141_p"}, {"name": "Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pgp160_p"]}, "charge": -3, "formula": "C38H73O13P2", "compartment": "p", "id": "pgp160_p"}, {"name": "Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)", "notes": {"original_bigg_ids": ["pgp160_c"]}, "charge": -3, "formula": "C38H73O13P2", "compartment": "c", "id": "pgp160_c"}, {"name": "Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)", "notes": {"original_bigg_ids": ["pgp161_p"]}, "charge": -3, "formula": "C38H69O13P2", "compartment": "p", "id": "pgp161_p"}, {"name": "Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)", "notes": {"original_bigg_ids": ["pgp161_c"]}, "charge": -3, "formula": "C38H69O13P2", "compartment": "c", "id": "pgp161_c"}, {"name": "Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pgp180_p"]}, "charge": -3, "formula": "C42H81O13P2", "compartment": "p", "id": "pgp180_p"}, {"name": "Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)", "notes": {"original_bigg_ids": ["pgp180_c"]}, "charge": -3, "formula": "C42H81O13P2", "compartment": "c", "id": "pgp180_c"}, {"name": "Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)", "notes": {"original_bigg_ids": ["pgp181_p"]}, "charge": -3, "formula": "C42H77O13P2", "compartment": "p", "id": "pgp181_p"}, {"name": "Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)", "notes": {"original_bigg_ids": ["pgp181_c"]}, "charge": -3, "formula": "C42H77O13P2", "compartment": "c", "id": "pgp181_c"}, {"name": "Protoheme", "notes": {"original_bigg_ids": ["pheme_p"]}, "charge": -2, "formula": "C34H30FeN4O4", "compartment": "p", "id": "pheme_p"}, {"name": "Phenylpyruvate", "notes": {"original_bigg_ids": ["phpyr_c"]}, "charge": -1, "formula": "C9H7O3", "compartment": "c", "id": "phpyr_c"}, {"name": "L-Phenylalanyl-tRNA(Phe)", "notes": {"original_bigg_ids": ["phetrna_c"]}, "charge": 1, "formula": "C9H10NOR", "compartment": "c", "id": "phetrna_c"}, {"name": "TRNA(Phe)", "notes": {"original_bigg_ids": ["trnaphe_c"]}, "charge": 0, "formula": "R", "compartment": "c", "id": "trnaphe_c"}, {"name": "L-Phenylalanine", "notes": {"original_bigg_ids": ["phe_DASH_L_p"]}, "charge": 0, "formula": "C9H11NO2", "compartment": "p", "id": "phe__L_p"}, {"name": "1-dodecanoyl-sn-glycerol 3-phosphate", "notes": {"original_bigg_ids": ["1ddecg3p_p"]}, "charge": -2, "formula": "C15H29O7P1", "compartment": "p", "id": "1ddecg3p_p"}, {"name": "1-tetradecanoyl-sn-glycerol 3-phosphate", "notes": {"original_bigg_ids": ["1tdecg3p_p"]}, "charge": -2, "formula": "C17H33O7P1", "compartment": "p", "id": "1tdecg3p_p"}, {"name": "1-tetradec-7-enoyl-sn-glycerol 3-phosphate", "notes": {"original_bigg_ids": ["1tdec7eg3p_p"]}, "charge": -2, "formula": "C17H31O7P1", "compartment": "p", "id": "1tdec7eg3p_p"}, {"name": "1-hexadecanoyl-sn-glycerol 3-phosphate", "notes": {"original_bigg_ids": ["1hdecg3p_p"]}, "charge": -2, "formula": "C19H37O7P1", "compartment": "p", "id": "1hdecg3p_p"}, {"name": "1-hexadec-9-enoyl-sn-glycerol 3-phosphate", "notes": {"original_bigg_ids": ["1hdec9eg3p_p"]}, "charge": -2, "formula": "C19H35O7P1", "compartment": "p", "id": "1hdec9eg3p_p"}, {"name": "1-octadecanoyl-sn-glycerol 3-phosphate", "notes": {"original_bigg_ids": ["1odecg3p_p"]}, "charge": -2, "formula": "C21H41O7P1", "compartment": "p", "id": "1odecg3p_p"}, {"name": "1-octadec-11-enoyl-sn-glycerol 3-phosphate", "notes": {"original_bigg_ids": ["1odec11eg3p_p"]}, "charge": -2, "formula": "C21H39O7P1", "compartment": "p", "id": "1odec11eg3p_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)", "notes": {"original_bigg_ids": ["1agpe120_p"]}, "charge": 0, "formula": "C17H36NO7P1", "compartment": "p", "id": "1agpe120_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)", "notes": {"original_bigg_ids": ["1agpe140_p"]}, "charge": 0, "formula": "C19H40NO7P1", "compartment": "p", "id": "1agpe140_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)", "notes": {"original_bigg_ids": ["1agpe141_p"]}, "charge": 0, "formula": "C19H38NO7P1", "compartment": "p", "id": "1agpe141_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)", "notes": {"original_bigg_ids": ["1agpe160_p"]}, "charge": 0, "formula": "C21H44NO7P1", "compartment": "p", "id": "1agpe160_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)", "notes": {"original_bigg_ids": ["1agpe161_p"]}, "charge": 0, "formula": "C21H42NO7P1", "compartment": "p", "id": "1agpe161_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)", "notes": {"original_bigg_ids": ["1agpe180_p"]}, "charge": 0, "formula": "C23H48NO7P1", "compartment": "p", "id": "1agpe180_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)", "notes": {"original_bigg_ids": ["1agpe181_p"]}, "charge": 0, "formula": "C23H46NO7P1", "compartment": "p", "id": "1agpe181_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)", "notes": {"original_bigg_ids": ["1agpg120_p"]}, "charge": -1, "formula": "C18H36O9P1", "compartment": "p", "id": "1agpg120_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)", "notes": {"original_bigg_ids": ["1agpg140_p"]}, "charge": -1, "formula": "C20H40O9P1", "compartment": "p", "id": "1agpg140_p"}, {"name": "1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)", "notes": {"original_bigg_ids": ["1agpg141_p"]}, 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{"name": "Oxaloacetate", "notes": {"original_bigg_ids": ["oaa_e"]}, "charge": -2, "formula": "C4H2O5", "compartment": "e", "id": "oaa_e"}, {"name": "Salmochelin-S2-Fe-III", "notes": {"original_bigg_ids": ["salchs2fe_e"]}, "charge": 0, "formula": "C42FeH49N3O26", "compartment": "e", "id": "salchs2fe_e"}, {"name": "L-gulonate", "notes": {"original_bigg_ids": ["guln_DASH_L_e"]}, "charge": 0, "formula": "C6H11O7", "compartment": "e", "id": "guln__L_e"}, {"name": "L-gulonate", "notes": {"original_bigg_ids": ["guln_DASH_L_p"]}, "charge": 0, "formula": "C6H11O7", "compartment": "p", "id": "guln__L_p"}, {"name": "4-Imidazolone-5-propanoate", "notes": {"original_bigg_ids": ["4iz5pp_c"]}, "charge": -1, "formula": "C6H7N2O3", "compartment": "c", "id": "4iz5pp_c"}, {"name": "Urocanate", "notes": {"original_bigg_ids": ["urocan_c"]}, "charge": -1, "formula": "C6H5N2O2", "compartment": "c", "id": "urocan_c"}, {"name": "Isocitrate", "notes": {"original_bigg_ids": ["icit_e"]}, "charge": -3, "formula": "C6H5O7", "compartment": "e", "id": "icit_e"}, {"name": "Isocitrate", "notes": {"original_bigg_ids": ["icit_p"]}, "charge": -3, "formula": "C6H5O7", "compartment": "p", "id": "icit_p"}, {"name": "2-3-dihydroxybenzoylserine trimer-Fe-III", "notes": {"original_bigg_ids": ["fe3dhbzs3_e"]}, "charge": 0, "formula": "C30FeH29N3O16", "compartment": "e", "id": "fe3dhbzs3_e"}, {"name": "4-Hydroxy-2-ketopimelate", "notes": {"original_bigg_ids": ["4h2kpi_c"]}, "charge": -2, "formula": "C7H8O6", "compartment": "c", "id": "4h2kpi_c"}, {"name": "Salmochelin-S2", "notes": {"original_bigg_ids": ["salchs2_e"]}, "charge": 0, "formula": "C42H49N3O26", "compartment": "e", "id": "salchs2_e"}, {"name": "Deoxyribose C5H10O4", "notes": {"original_bigg_ids": ["drib_e"]}, "charge": 0, "formula": "C5H10O4", "compartment": "e", "id": "drib_e"}, {"name": "4-Hydroxy-L-threonine", "notes": {"original_bigg_ids": ["4hthr_p"]}, "charge": 0, "formula": "C4H9NO4", "compartment": "p", "id": "4hthr_p"}, {"name": "D-Glycerate 2-phosphate", "notes": {"original_bigg_ids": ["2pg_e"]}, "charge": -3, "formula": "C3H4O7P", "compartment": "e", "id": "2pg_e"}, {"name": "Flavodoxin (oxidized) - obsolete", "notes": {"original_bigg_ids": ["fldox_c"]}, "charge": 0, "formula": "X", "compartment": "c", "id": "fldox_c"}, {"name": "Flavodoxin (reduced) - obsolete", "notes": {"original_bigg_ids": ["fldrd_c"]}, "charge": 0, "formula": "XH2", "compartment": "c", "id": "fldrd_c"}, {"name": "4-hydroxy-5-methyl-3(2H)-furanone", "notes": {"original_bigg_ids": ["hmfurn_c"]}, "charge": 0, "formula": "C5H6O3", "compartment": "c", "id": "hmfurn_c"}, {"name": "Formamide", "notes": {"original_bigg_ids": ["foam_e"]}, "charge": 0, "formula": "CH3NO", "compartment": "e", "id": "foam_e"}, {"name": "Tricarballylate", "notes": {"original_bigg_ids": ["tcb_p"]}, "charge": -3, "formula": "C6H5O6", "compartment": "p", "id": "tcb_p"}, {"notes": {"original_bigg_ids": ["colipaOA_e"]}, "compartment": "e", "name": "Membrane LPS mixture", "charge": 0, "id": "colipaOA_e"}, {"name": "Salmochelin-SX", "notes": {"original_bigg_ids": ["salchsx_e"]}, "charge": -1, "formula": "C16H21NO11", "compartment": "e", "id": "salchsx_e"}, {"name": "2-Aminoethylphosphonate", "notes": {"original_bigg_ids": ["AEP_e"]}, "charge": -1, "formula": "C2H7N1O3P1", "compartment": "e", "id": "AEP_e"}, {"name": "Oxaloacetate", "notes": {"original_bigg_ids": ["oaa_p"]}, "charge": -2, "formula": "C4H2O5", "compartment": "p", "id": "oaa_p"}, {"name": "Phosphoenolpyruvate", "notes": {"original_bigg_ids": ["pep_e"]}, "charge": -3, "formula": "C3H2O6P", "compartment": "e", "id": "pep_e"}, {"name": "Pseudouridine 5  phosphate C9H11N2O9P", "notes": {"original_bigg_ids": ["psd5p_c"]}, "charge": -2, "formula": "C9H13N2O9P", "compartment": "c", "id": "psd5p_c"}, {"name": "O-antigen-x20-core-oligosaccharide-lipid-A", "notes": {"original_bigg_ids": ["colipa20Oag_e"]}, "charge": -11, "formula": "C656H1103N2O440P4", "compartment": "e", "id": "colipa20Oag_e"}, {"name": "D-biotin d-sulfoxide", "notes": {"original_bigg_ids": ["btnso_c"]}, "charge": -1, "formula": "C10H15N2O4S", "compartment": "c", "id": "btnso_c"}, {"name": "Salmochelin-SX", "notes": {"original_bigg_ids": ["salchsx_p"]}, "charge": -1, "formula": "C16H21NO11", "compartment": "p", "id": "salchsx_p"}, {"name": "Residual-atoms-of-reaction-DMBZIDSYN", "notes": {"original_bigg_ids": ["remnant1_e"]}, "charge": 0, "formula": "C4H2N2O3", "compartment": "e", "id": "remnant1_e"}, {"name": "Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose-acetyl", "notes": {"original_bigg_ids": ["udcpo5_e"]}, "charge": -2, "formula": "C81H134O25P2", "compartment": "e", "id": "udcpo5_e"}, {"name": "N Ribosylnicotinamide C11H15N2O5", "notes": {"original_bigg_ids": ["rnam_e"]}, "charge": 1, "formula": "C11H15N2O5", "compartment": "e", "id": "rnam_e"}, {"name": "Cis-Aconitate", "notes": {"original_bigg_ids": ["acon_DASH_C_p"]}, "charge": -3, "formula": "C6H3O6", "compartment": "p", "id": "acon_C_p"}, {"name": "Adenosylcobalamin-phosphate", "notes": {"original_bigg_ids": ["adocblp_c"]}, "charge": -2, "formula": "C72H99CoN18O20P2", "compartment": "c", "id": "adocblp_c"}, {"name": "Cobalt-precorrin-2", "notes": {"original_bigg_ids": ["codscl2_c"]}, "charge": -7, "formula": "C42H39CoN4O16", "compartment": "c", "id": "codscl2_c"}, {"name": "Aminoimidazole-riboside", "notes": {"original_bigg_ids": ["airs_e"]}, "charge": 0, "formula": "C8H13N3O4", "compartment": "e", "id": "airs_e"}, {"name": "2-Oxohept-3-ene-1,7-dioate", "notes": {"original_bigg_ids": ["2ohed_c"]}, "charge": -2, "formula": "C7H6O5", "compartment": "c", "id": "2ohed_c"}, {"name": "Deoxyribose C5H10O4", "notes": {"original_bigg_ids": ["drib_p"]}, "charge": 0, "formula": "C5H10O4", "compartment": "p", "id": "drib_p"}, {"name": "Tetrathionate", "notes": {"original_bigg_ids": ["tet_p"]}, "charge": -2, "formula": "O6S4", "compartment": "p", "id": "tet_p"}, {"name": "Ferrioxamine-G-fe", "notes": {"original_bigg_ids": ["feroxGfe_e"]}, "charge": 0, "formula": "C27H46FeN6O10", "compartment": "e", "id": "feroxGfe_e"}, {"name": "2-Aminoethylphosphonate", "notes": {"original_bigg_ids": ["AEP_p"]}, "charge": -1, "formula": "C2H7N1O3P1", "compartment": "p", "id": "AEP_p"}, {"name": "Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose", "notes": {"original_bigg_ids": ["udcpo4_e"]}, "charge": -2, "formula": "C79H132O24P2", "compartment": "e", "id": "udcpo4_e"}, {"name": "D-Tagatose", "notes": {"original_bigg_ids": ["tag_DASH_D_e"]}, "charge": 0, "formula": "C6H12O6", "compartment": "e", "id": "tag__D_e"}, {"name": "Salmochelin-S2-Fe-III", "notes": {"original_bigg_ids": ["salchs2fe_c"]}, "charge": 0, "formula": "C42FeH49N3O26", "compartment": "c", "id": "salchs2fe_c"}, {"name": "Salmochelin-S2-Fe-III", "notes": {"original_bigg_ids": ["salchs2fe_p"]}, "charge": 0, "formula": "C42FeH49N3O26", "compartment": "p", "id": "salchs2fe_p"}, {"name": "D-Tagatose", "notes": {"original_bigg_ids": ["tag_DASH_D_p"]}, "charge": 0, "formula": "C6H12O6", "compartment": "p", "id": "tag__D_p"}, {"name": "D-Glycerate 2-phosphate", "notes": {"original_bigg_ids": ["2pg_p"]}, "charge": -3, "formula": "C3H4O7P", "compartment": "p", "id": "2pg_p"}, {"name": "Ferrioxamine-G", "notes": {"original_bigg_ids": ["feroxG_e"]}, "charge": 0, "formula": "C27H46N6O10", "compartment": "e", "id": "feroxG_e"}, {"name": "Formamide", "notes": {"original_bigg_ids": ["foam_p"]}, "charge": 0, "formula": "CH3NO", "compartment": "p", "id": "foam_p"}, {"name": "4-Hydroxy-benzyl alcohol", "notes": {"original_bigg_ids": ["4hba_c"]}, "charge": 0, "formula": "C7H8O2", "compartment": "c", "id": "4hba_c"}, {"notes": {"original_bigg_ids": ["diact_e"]}, "compartment": "e", "name": "Diacetyl", "charge": 0, "id": "diact_e"}, {"notes": {"original_bigg_ids": ["indpyr_c"]}, "compartment": "c", "name": "Indolepyruvate C11H8NO3", "charge": 0, "id": "indpyr_c"}, {"notes": {"original_bigg_ids": ["pprdn_c"]}, "compartment": "c", "name": "Piperideine", "charge": 0, "id": "pprdn_c"}, {"notes": {"original_bigg_ids": ["5aptn_c"]}, "compartment": "c", "name": "5-Aminopentanoate", "charge": 0, "id": "5aptn_c"}, {"notes": {"original_bigg_ids": ["btd_DASH_RR_e"]}, "compartment": "e", "name": " R R  2 3 Butanediol C4H10O2", "charge": 0, "id": "btd_RR_e"}, {"name": "3-Oxoadipyl-CoA", "notes": {"original_bigg_ids": ["oxadpcoa_c"]}, "charge": -5, "formula": "C27H37N7O20P3S", "compartment": "c", "id": "oxadpcoa_c"}, {"notes": {"original_bigg_ids": ["rbt_e"]}, "compartment": "e", "name": "Ribitol", "charge": 0, "id": "rbt_e"}, {"notes": {"original_bigg_ids": ["cellb_e"]}, "compartment": "e", "name": "Cellobiose", "charge": 0, "id": "cellb_e"}, {"notes": {"original_bigg_ids": ["bz_e"]}, "compartment": "e", "name": "Benzoate", "charge": 0, "id": "bz_e"}, {"notes": {"original_bigg_ids": ["13ppd_e"]}, "compartment": "e", "name": "1,3-Propanediol", "charge": 0, "id": "13ppd_e"}, {"notes": {"original_bigg_ids": ["glutar_c"]}, "compartment": "c", "name": "Glutarate", "charge": 0, "id": "glutar_c"}, {"notes": {"original_bigg_ids": ["glutcoa_c"]}, "compartment": "c", "name": "Glutaryl-CoA", "charge": 0, "id": "glutcoa_c"}, {"notes": {"original_bigg_ids": ["abt_DASH_D_e"]}, "compartment": "e", "name": "D-Arabitol", "charge": 0, "id": "abt__D_e"}, {"name": "3-(3-hydroxy-phenyl)propionate", "notes": {"original_bigg_ids": ["3hpppn_c"]}, "charge": -1, "formula": "C9H9O3", "compartment": "c", "id": "3hpppn_c"}, {"name": "D-Allose", "notes": {"original_bigg_ids": ["all_DASH_D_c"]}, "charge": 0, "formula": "C6H12O6", "compartment": "c", "id": "all__D_c"}, {"name": "Cyclic diguanosine monophosphate", "notes": {"original_bigg_ids": ["cdigmp_c"]}, "charge": 0, "formula": "C20H22N10O14P2", "compartment": "c", "id": "cdigmp_c"}, {"name": "S-Methyl-L-methionine", "notes": {"original_bigg_ids": ["mmet_c"]}, "charge": 1, "formula": "C6H14NO2S", "compartment": "c", "id": "mmet_c"}, {"name": "Cyanate", "notes": {"original_bigg_ids": ["cynt_c"]}, "charge": -1, "formula": "CNO", "compartment": "c", "id": "cynt_c"}, {"name": "Acetoacetate", "notes": {"original_bigg_ids": ["acac_c"]}, "charge": -1, "formula": "C4H5O3", "compartment": "c", "id": "acac_c"}, {"name": "Fe p", "notes": {"original_bigg_ids": ["fe_e"]}, "charge": 0, "formula": "Fe", "compartment": "e", "id": "fe_e"}, {"name": "2-Oxopent-4-enoate", "notes": {"original_bigg_ids": ["op4en_c"]}, "charge": -1, "formula": "C5H5O3", "compartment": "c", "id": "op4en_c"}, {"name": "4-Hydroxy-2-oxopentanoate", "notes": {"original_bigg_ids": ["4h2opntn_c"]}, "charge": -1, "formula": "C5H7O4", "compartment": "c", "id": "4h2opntn_c"}, {"name": "KO-KDO-LIPID A", "notes": {"original_bigg_ids": ["kokdolipidA_e"]}, "charge": 0, "formula": "C110H196N2O40P2", "compartment": "e", "id": "kokdolipidA_e"}, {"name": "3-hydroxycinnamic acid", "notes": {"original_bigg_ids": ["3hcinnm_c"]}, "charge": -1, "formula": "C9H7O3", "compartment": "c", "id": "3hcinnm_c"}, {"name": "D Galactosamine 6 phosphate C6H14NO8P", "notes": {"original_bigg_ids": ["galam6p_c"]}, "charge": 0, "formula": "C6H14NO8P", "compartment": "c", "id": "galam6p_c"}, {"name": "Sucrose", "notes": {"original_bigg_ids": ["sucr_c"]}, "charge": 0, "formula": "C12H22O11", "compartment": "c", "id": "sucr_c"}, {"name": "Cellobiose", "notes": {"original_bigg_ids": ["cellb_p"]}, "charge": 0, "formula": "C12H22O11", "compartment": "p", "id": "cellb_p"}, {"name": "3 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["3hoxpac_e"]}, "charge": 0, "formula": "C8H8O3", "compartment": "e", "id": "3hoxpac_e"}, {"name": "Penicillin G C16H18N2O4S", "notes": {"original_bigg_ids": ["peng_p"]}, "charge": 0, "formula": "C16H18N2O4S", "compartment": "p", "id": "peng_p"}, {"name": "Penicillin G C16H18N2O4S", "notes": {"original_bigg_ids": ["peng_e"]}, "charge": 0, "formula": "C16H18N2O4S", "compartment": "e", "id": "peng_e"}, {"name": "Raffinose C18H32O16", "notes": {"original_bigg_ids": ["raffin_e"]}, "charge": 0, "formula": "C18H32O16", "compartment": "e", "id": "raffin_e"}, {"name": "Raffinose C18H32O16", "notes": {"original_bigg_ids": ["raffin_p"]}, "charge": 0, "formula": "C18H32O16", "compartment": "p", "id": "raffin_p"}, {"name": "D Galactosamine C6H13NO5", "notes": {"original_bigg_ids": ["galam_p"]}, "charge": 0, "formula": "C6H13NO5", "compartment": "p", "id": "galam_p"}, {"name": "4 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["4hoxpac_e"]}, "charge": 0, "formula": "C8H8O3", "compartment": "e", "id": "4hoxpac_e"}, {"name": "3 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["3hoxpac_p"]}, "charge": 0, "formula": "C8H8O3", "compartment": "p", "id": "3hoxpac_p"}, {"name": "2 3 2'3' Tetrakis beta hydroxymyristoyl  D glucosaminyl 1 6 beta D glucosamine 1 4' bisphosphate C68H126N2O23P2", "notes": {"original_bigg_ids": ["lipidA_core_e_p"]}, "charge": 0, "formula": "C68H126N2O23P2", "compartment": "p", "id": "lipidA_core_e_p"}, {"name": "6 Aminopenicillanic acid C8H12N2O3S", "notes": {"original_bigg_ids": ["6apa_e"]}, "charge": 0, "formula": "C8H12N2O3S", "compartment": "e", "id": "6apa_e"}, {"name": "6 Aminopenicillanic acid C8H12N2O3S", "notes": {"original_bigg_ids": ["6apa_p"]}, "charge": 0, "formula": "C8H12N2O3S", "compartment": "p", "id": "6apa_p"}, {"name": "(R)-Methylmalonyl-CoA", "notes": {"original_bigg_ids": ["mmcoa_R_c"]}, "charge": 0, "formula": "C25H35N7O19P3S", "compartment": "c", "id": "mmcoa__R_c"}, {"name": "D Galactosamine C6H13NO5", "notes": {"original_bigg_ids": ["galam_e"]}, "charge": 0, "formula": "C6H13NO5", "compartment": "e", "id": "galam_e"}, {"name": "1' Phosphoethanolamin lipidIVa C70H132N3O26P3", "notes": {"original_bigg_ids": ["enlipidA_LptA_p"]}, "charge": 0, "formula": "C70H132N3O26P3", "compartment": "p", "id": "enlipidA_LptA_p"}, {"name": "1' Phosphoethanolamin lipidIVa C70H132N3O26P3", "notes": {"original_bigg_ids": ["enlipidA_p"]}, "charge": 0, "formula": "C70H132N3O26P3", "compartment": "p", "id": "enlipidA_p"}, {"notes": {"original_bigg_ids": ["LptA_p"]}, "compartment": "p", "name": "Periplasmic lipid A binding protein ", "charge": 0, "id": "LptA_p"}, {"name": "3 Nitrotyramine C8H15N2", "notes": {"original_bigg_ids": ["3ntym_e"]}, "charge": 0, "formula": "C8H15N2", "compartment": "e", "id": "3ntym_e"}, {"name": "Salicin", "notes": {"original_bigg_ids": ["salcn_p"]}, "charge": 0, "formula": "C13H18O7", "compartment": "p", "id": "salcn_p"}, {"name": "Salicin", "notes": {"original_bigg_ids": ["salcn_e"]}, "charge": 0, "formula": "C13H18O7", "compartment": "e", "id": "salcn_e"}, {"name": "1' Phosphoethanolamin lipidIVa C70H132N3O26P3", "notes": {"original_bigg_ids": ["enlipidA_e"]}, "charge": 0, "formula": "C70H132N3O26P3", "compartment": "e", "id": "enlipidA_e"}, {"name": "Phenylacetic acid", "notes": {"original_bigg_ids": ["pac_e"]}, "charge": 0, "formula": "C8H7O2", "compartment": "e", "id": "pac_e"}, {"name": "N Acetyl D galactosamine 6 phosphate C8H16NO9P", "notes": {"original_bigg_ids": ["acgal6p_c"]}, "charge": 0, "formula": "C8H16NO9P", "compartment": "c", "id": "acgal6p_c"}, {"name": "3 Hydroxyphenylacetic acid C8H8O3", "notes": {"original_bigg_ids": ["3hoxpac_c"]}, "charge": 0, "formula": "C8H8O3", "compartment": "c", "id": "3hoxpac_c"}, {"name": "Phenylacetic acid", "notes": {"original_bigg_ids": ["pac_p"]}, "charge": 0, "formula": "C8H7O2", "compartment": "p", "id": "pac_p"}, {"name": " O6 antigen x4 core oligosaccharide lipid A O225H390N2O120P2", "notes": {"original_bigg_ids": ["o6a4colipa_e"]}, "charge": 0, "formula": "O225H390N2O120P2", "compartment": "e", "id": "o6a4colipa_e"}, {"name": "D-Ribulose", "notes": {"original_bigg_ids": ["rbl_DASH_D_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "rbl__D_c"}, {"name": "D Arabinose C5H10O5", "notes": {"original_bigg_ids": ["arab_DASH_D_c"]}, "charge": 0, "formula": "C5H10O5", "compartment": "c", "id": "arab__D_c"}, {"name": "D Arabinose C5H10O5", "notes": {"original_bigg_ids": ["arab_DASH_D_e"]}, "charge": 0, "formula": "C5H10O5", "compartment": "e", "id": "arab__D_e"}, {"name": "D Arabinose C5H10O5", "notes": {"original_bigg_ids": ["arab_DASH_D_p"]}, "charge": 0, "formula": "C5H10O5", "compartment": "p", "id": "arab__D_p"}, {"name": "Betaine aldehyde", "notes": {"original_bigg_ids": ["betald_c"]}, "charge": 1, "formula": "C5H12NO", "compartment": "c", "id": "betald_c"}, {"name": "2,3-dehydroadipyl-CoA", "notes": {"original_bigg_ids": ["23dhacoa_c"]}, "charge": -5, "formula": "C27H37N7O19P3S", "compartment": "c", "id": "23dhacoa_c"}, {"name": "(3S)-3-Hydroxyadipyl-CoA", "notes": {"original_bigg_ids": ["3hadpcoa_c"]}, "charge": -5, "formula": "C27H39N7O20P3S", "compartment": "c", "id": "3hadpcoa_c"}, {"notes": {"original_bigg_ids": ["srb1p_c"]}, "compartment": "c", "name": "Sorbose 1-phosphate", "charge": 0, "id": "srb1p_c"}, {"notes": {"original_bigg_ids": ["ggagicolipa_c"]}, "compartment": "c", "name": "Glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A", "charge": 0, "id": "ggagicolipa_c"}, {"notes": {"original_bigg_ids": ["gggagicolipa_c"]}, "compartment": "c", "name": "Glucosyl-glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A", "charge": 0, "id": "gggagicolipa_c"}, {"notes": {"original_bigg_ids": ["2ombz_c"]}, "compartment": "c", "name": "2-Octaprenyl-6-methoxy-1,4-benzoquinone", "charge": 0, "id": "2ombz_c"}, {"notes": {"original_bigg_ids": ["2ommb_c"]}, "compartment": "c", "name": "2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone", "charge": 0, "id": "2ommb_c"}, {"notes": {"original_bigg_ids": ["raffin_c"]}, "compartment": "c", "name": "Raffinose C18H32O16", "charge": 0, "id": "raffin_c"}, {"notes": {"original_bigg_ids": ["2hyoxplac_c"]}, "compartment": "c", "name": "2-Hydroxyphenylacetate", "charge": 0, "id": "2hyoxplac_c"}], "version": 1, "id": "iSF_1195"}